SMTL ID : 1jv6.1

BACTERIORHODOPSIN D85S/F219L DOUBLE MUTANT AT 2.00 ANGSTROM RESOLUTION

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x RET: RETINAL(Covalent)

RET.1: 16 residues within 4Å: Chain A: Y.83, W.86, T.89, T.90, L.93, M.118, S.141, T.142, M.145, W.182, Y.185, P.186, W.189, D.212, A.215, K.216 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:Y.83, A:W.86, A:W.86, A:T.90, A:L.93, A:M.145, A:W.182, A:Y.185, A:Y.185, A:Y.185, A:Y.185, A:Y.185, A:P.186, A:W.189, A:W.189, A:A.215, A:K.216

8 x LI1: 1-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL(Non-covalent)

LI1.2: 8 residues within 4Å: Chain A: A.184, V.187, I.191, I.198, V.199, P.200, I.203 Ligands: LI1.5 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:A.184, A:V.187, A:I.191, A:V.199, A:P.200, A:I.203 LI1.3: 8 residues within 4Å: Chain A: I.52, T.55, M.56, W.80, A.81, A.84, F.88 Ligands: LI1.4 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:I.52, A:I.52, A:A.81, A:A.84, A:F.88 LI1.4: 2 residues within 4Å: Chain A: S.59 Ligands: LI1.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.59 LI1.5: 7 residues within 4Å: Chain A: V.173, N.176, V.177, V.180, L.181 Ligands: LI1.2, LI1.6 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.173, A:V.177, A:V.180, A:L.181 LI1.6: 2 residues within 4Å: Chain A: N.176 Ligands: LI1.5 No protein-ligand interaction detected (PLIP) LI1.7: 11 residues within 4Å: Chain A: Y.131, R.134, F.135, W.138, A.139, T.142, L.190, E.194, G.195, A.196 Ligands: LI1.9 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:Y.131, A:R.134, A:F.135, A:F.135, A:W.138, A:W.138, A:W.138, A:A.139, A:T.142, A:L.190, A:L.190 LI1.8: 4 residues within 4Å: Chain A: Y.131, S.132, F.135, V.136 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.135, A:F.135, A:V.136 LI1.9: 2 residues within 4Å: Chain A: Y.131 Ligands: LI1.7 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rouhani, S. et al., Crystal structure of the D85S mutant of bacteriorhodopsin: model of an O-like photocycle intermediate. J.Mol.Biol. (2001)

Release Date

2001-10-31

Peptides

Bacteriorhodopsin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Bacteriorhodopsin