SMTL ID : 1jv7.1

BACTERIORHODOPSIN O-LIKE INTERMEDIATE STATE OF THE D85S MUTANT AT 2.25 ANGSTROM RESOLUTION

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

monomer

Ligands

1 x RET: RETINAL(Covalent)

RET.1: 16 residues within 4Å: Chain A: Y.83, W.86, T.89, T.90, L.93, M.118, S.141, T.142, M.145, W.182, Y.185, P.186, W.189, D.212, A.215, K.216 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:Y.83, A:W.86, A:W.86, A:T.90, A:L.93, A:M.145, A:W.182, A:Y.185, A:Y.185, A:Y.185, A:Y.185, A:P.186, A:W.189, A:W.189, A:A.215, A:K.216

9 x LI1: 1-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL(Non-covalent)(Non-functional Binders)

LI1.2: 8 residues within 4Å: Chain A: V.187, I.191, I.198, V.199, P.200, I.203, L.207 Ligands: LI1.6 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.187, A:I.191, A:V.199, A:P.200, A:I.203 LI1.3: 5 residues within 4Å: Chain A: I.117, T.121, V.124, A.144, Y.147 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:I.117, A:T.121, A:V.124, A:Y.147 LI1.4: 2 residues within 4Å: Chain A: A.143, Y.150 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:A.143, A:Y.150, A:Y.150 LI1.5: 10 residues within 4Å: Chain A: F.54, T.55, M.56, L.58, S.59, I.78, W.80, A.81, A.84, F.88 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.58, A:A.84, A:F.88 Hydrogen bonds: A:I.78 LI1.6: 8 residues within 4Å: Chain A: K.172, V.173, N.176, V.177, V.180, L.181 Ligands: LI1.2, LI1.7 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.173, A:V.177, A:L.181 LI1.7: 1 residues within 4Å: Ligands: LI1.6 No protein-ligand interaction detected (PLIP) LI1.8: 10 residues within 4Å: Chain A: Y.131, R.134, F.135, W.138, A.139, T.142, L.190, G.195, A.196 Ligands: LI1.10 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Y.131, A:Y.131, A:R.134, A:F.135, A:W.138, A:L.190 Hydrogen bonds: A:Y.131 LI1.9: 4 residues within 4Å: Chain A: Y.131, S.132, F.135, V.136 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.135, A:V.136 LI1.10: 2 residues within 4Å: Chain A: Y.131 Ligands: LI1.8 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Rouhani, S. et al., Crystal structure of the D85S mutant of bacteriorhodopsin: model of an O-like photocycle intermediate. J.Mol.Biol. (2001)

Release Date

2001-10-31

Peptides

Bacteriorhodopsin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bacteriorhodopsin

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