- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.25 Å
- Oligo State
- monomer
- Ligands
- 1 x RET: RETINAL(Covalent)
- 9 x LI1: 1-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL(Non-covalent)(Non-functional Binders)
LI1.2: 8 residues within 4Å:- Chain A: V.187, I.191, I.198, V.199, P.200, I.203, L.207
- Ligands: LI1.6
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:V.187, A:I.191, A:V.199, A:P.200, A:I.203
LI1.3: 5 residues within 4Å:- Chain A: I.117, T.121, V.124, A.144, Y.147
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:I.117, A:T.121, A:V.124, A:Y.147
LI1.4: 2 residues within 4Å:- Chain A: A.143, Y.150
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:A.143, A:Y.150, A:Y.150
LI1.5: 10 residues within 4Å:- Chain A: F.54, T.55, M.56, L.58, S.59, I.78, W.80, A.81, A.84, F.88
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:L.58, A:A.84, A:F.88
- Hydrogen bonds: A:I.78
LI1.6: 8 residues within 4Å:- Chain A: K.172, V.173, N.176, V.177, V.180, L.181
- Ligands: LI1.2, LI1.7
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:V.173, A:V.177, A:L.181
LI1.7: 1 residues within 4Å:- Ligands: LI1.6
No protein-ligand interaction detected (PLIP)LI1.8: 10 residues within 4Å:- Chain A: Y.131, R.134, F.135, W.138, A.139, T.142, L.190, G.195, A.196
- Ligands: LI1.10
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:Y.131, A:Y.131, A:R.134, A:F.135, A:W.138, A:L.190
- Hydrogen bonds: A:Y.131
LI1.9: 4 residues within 4Å:- Chain A: Y.131, S.132, F.135, V.136
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:F.135, A:V.136
LI1.10: 2 residues within 4Å:- Chain A: Y.131
- Ligands: LI1.8
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBj PDBsum CATH PLIP
- Citation
-
Rouhani, S. et al., Crystal structure of the D85S mutant of bacteriorhodopsin: model of an O-like photocycle intermediate. J.Mol.Biol. (2001)
- Release Date
- 2001-10-31
- Peptides
- Bacteriorhodopsin: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.25 Å
- Oligo State
- monomer
- Ligands
- 1 x RET: RETINAL(Covalent)
- 9 x LI1: 1-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL(Non-covalent)(Non-functional Binders)
- Links
- RCSB PDBe PDBj PDBsum CATH PLIP
- Citation
-
Rouhani, S. et al., Crystal structure of the D85S mutant of bacteriorhodopsin: model of an O-like photocycle intermediate. J.Mol.Biol. (2001)
- Release Date
- 2001-10-31
- Peptides
- Bacteriorhodopsin: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A - Membrane
-
We predict this structure to be a membrane protein.