SMTL ID : 1jwb.1

Structure of the Covalent Acyl-Adenylate Form of the MoeB-MoaD Protein Complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-2-2-mer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.172, C.175, C.244, C.247 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.172, A:C.175, A:C.244, A:C.247 ZN.4: 4 residues within 4Å: Chain C: C.172, C.175, C.244, C.247 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.172, C:C.175, C:C.244, C:C.247

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: S.69, N.70, R.73, Q.74 Chain C: R.14 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:S.69, A:S.69, A:N.70 Water bridges: A:R.73 Salt bridges: A:R.73, C:R.14 SO4.5: 5 residues within 4Å: Chain A: R.14 Chain C: S.69, N.70, R.73, Q.74 6 PLIP interactions: 5 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:S.69, C:S.69, C:N.70 Water bridges: C:R.73 Salt bridges: C:R.73, A:R.14

2 x AMP: ADENOSINE MONOPHOSPHATE(Covalent)

AMP.3: 18 residues within 4Å: Chain A: V.37, G.38, G.40, G.41, L.61, D.62, F.63, D.64, R.73, Q.74, K.86, L.109, C.128, T.129, D.130, N.131, V.134 Chain B: G.81 18 PLIP interactions: 17 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:G.40, A:G.41, A:F.63, A:D.64, A:D.64, A:K.86, A:N.131, B:G.81 Water bridges: A:L.42, A:R.73, A:R.73, A:R.73, A:R.73, A:L.110, A:V.134 Salt bridges: A:R.73 pi-Stacking: A:F.63, A:F.63 AMP.6: 18 residues within 4Å: Chain C: V.37, G.38, G.40, G.41, L.61, D.62, F.63, D.64, R.73, Q.74, K.86, L.109, C.128, T.129, D.130, N.131, V.134 Chain D: G.81 18 PLIP interactions: 17 interactions with chain C, 1 interactions with chain D Hydrogen bonds: C:G.40, C:G.41, C:F.63, C:D.64, C:K.86, C:D.130, C:N.131, D:G.81 Water bridges: C:L.42, C:R.73, C:R.73, C:R.73, C:R.73, C:L.110, C:V.134 Salt bridges: C:R.73 pi-Stacking: C:F.63, C:F.63

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lake, M.W. et al., Mechanism of ubiquitin activation revealed by the structure of a bacterial MoeB-MoaD complex. Nature (2001)

Release Date

2001-11-21

Peptides

MOLYBDOPTERIN BIOSYNTHESIS MOEB PROTEIN: AC
MOLYBDOPTERIN [MPT] CONVERTING FACTOR, SUBUNIT 1: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

C
B

B
D

D
D

MOLYBDOPTERIN BIOSYNTHESIS MOEB PROTEIN

MOLYBDOPTERIN [MPT] CONVERTING FACTOR, SUBUNIT 1

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