SMTL ID : 1jwt.1

CRYSTAL STRUCTURE OF THROMBIN IN COMPLEX WITH A NOVEL BICYCLIC LACTAM INHIBITOR

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x BLI: 4-OXO-2-PHENYLMETHANESULFONYL-OCTAHYDRO-PYRROLO[1,2-A]PYRAZINE-6-CARBOXYLIC ACID [1-(N-HYDROXYCARBAMIMIDOYL)-PIPERIDIN-4-YLMETHYL]-AMIDE(Non-covalent)

BLI.1: 16 residues within 4Å: Chain A: H.79, Y.83, N.131, I.215, D.235, A.236, C.237, E.238, S.241, V.261, S.262, W.263, G.264, G.266, G.274, Y.276 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:I.215, A:V.261, A:W.263, A:W.263 Hydrogen bonds: A:A.236, A:S.262, A:G.264, A:G.266, A:Y.276 Salt bridges: A:D.235

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Levesque, S. et al., Novel bicyclic lactam inhibitors of thrombin: potency and selectivity optimization through P1 residues. Bioorg.Med.Chem.Lett. (2001)

Release Date

2002-02-27

Peptides

Prothrombin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Prothrombin