SMTL ID : 1jx2.1

CRYSTAL STRUCTURE OF THE NUCLEOTIDE-FREE DYNAMIN A GTPASE DOMAIN, DETERMINED AS MYOSIN FUSION

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x BGC: beta-D-glucopyranose(Non-covalent)

BGC.1: 6 residues within 4Å: Chain A: Y.484, K.488, D.529, R.531, K.646, A.650 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:Y.484, A:K.488, A:K.488, A:K.488, A:D.529, A:R.531, A:K.646, A:K.646 Water bridges: A:K.488, A:Q.522, A:R.531 Salt bridges: A:K.646

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: T.197, S.248 Ligands: ADP.3 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:T.197, A:S.248, H2O.1, H2O.2, H2O.3

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.3: 18 residues within 4Å: Chain A: I.126, N.138, P.139, F.140, K.141, R.142, Y.146, E.191, S.192, G.193, A.194, G.195, K.196, T.197, E.198, N.244, N.246 Ligands: MG.2 24 PLIP interactions: 24 interactions with chain A Hydrogen bonds: A:N.138, A:Y.146, A:G.193, A:A.194, A:G.195, A:K.196, A:T.197, A:E.198, A:E.198, A:N.244, A:N.246 Water bridges: A:R.142, A:R.142, A:R.142, A:R.142, A:R.142, A:K.196, A:K.196, A:T.197, A:S.248, A:S.248, A:S.248, A:D.465 Salt bridges: A:K.196

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Niemann, H.H. et al., Crystal structure of a dynamin GTPase domain in both nucleotide-free and GDP-bound forms. EMBO J. (2001)

Release Date

2001-11-07

Peptides

Myosin-2 heavy chain,Dynamin-A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Myosin-2 heavy chain,Dynamin-A

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