SMTL ID : 1jxi.1

4-Amino-5-hydroxymethyl-2-methylpyrimidine Phosphate Kinase from Salmonella typhimurium complexed with 4-Amino-5-hydroxymethyl-2-methylpyrimidine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.64 Å

Oligo State

homo-dimer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: D.127, T.128, E.164, K.198, G.234, C.235 Ligands: SO4.2 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.198 SO4.2: 7 residues within 4Å: Chain A: T.230, H.231, G.232, T.233, G.234 Ligands: SO4.1, HMH.3 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.230, A:H.231, A:G.232, A:T.233, A:G.234 SO4.4: 7 residues within 4Å: Chain B: D.127, T.128, E.164, K.198, G.234 Ligands: SO4.5, HMH.6 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.127 Water bridges: B:K.198 Salt bridges: B:K.198 SO4.5: 6 residues within 4Å: Chain B: T.230, G.232, T.233, G.234 Ligands: SO4.4, HMH.6 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.230, B:G.232, B:T.233, B:G.234

2 x HMH: 4-AMINO-5-HYDROXYMETHYL-2-METHYLPYRIMIDINE(Non-covalent)

HMH.3: 9 residues within 4Å: Chain A: G.33, T.34, G.41, E.66, M.102, V.129, K.133, C.235 Ligands: SO4.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.66, A:K.133 HMH.6: 10 residues within 4Å: Chain B: G.33, T.34, V.64, E.66, M.102, V.129, K.133, C.235 Ligands: SO4.4, SO4.5 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:V.64 Hydrogen bonds: B:E.66, B:K.133

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cheng, G. et al., Crystal structure of 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate kinase from Salmonella typhimurium at 2.3 A resolution. Structure (2002)

Release Date

2002-02-27

Peptides

PHOSPHOMETHYLPYRIMIDINE KINASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

PHOSPHOMETHYLPYRIMIDINE KINASE

Related Entries With Identical Sequence