SMTL ID : 1jym.1

Crystals of Peptide Deformylase from Plasmodium falciparum with Ten Subunits per Asymmetric Unit Reveal Critical Characteristics of the Active Site for Drug Design

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-10-mer

Ligands

10 x CO: COBALT (II) ION(Non-covalent)

CO.1: 4 residues within 4Å: Chain A: Q.49, C.93, H.134, H.138 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:C.93, A:H.134, A:H.138, H2O.22 CO.2: 4 residues within 4Å: Chain B: Q.49, C.93, H.134, H.138 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:C.93, B:H.134, B:H.138, H2O.39 CO.3: 4 residues within 4Å: Chain C: Q.49, C.93, H.134, H.138 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:C.93, C:H.134, C:H.138, H2O.56 CO.4: 4 residues within 4Å: Chain D: Q.49, C.93, H.134, H.138 4 PLIP interactions: 3 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:C.93, D:H.134, D:H.138, H2O.72 CO.5: 4 residues within 4Å: Chain E: Q.49, C.93, H.134, H.138 4 PLIP interactions: 3 interactions with chain E, 1 Ligand-Water interactions Metal complexes: E:C.93, E:H.134, E:H.138, H2O.91 CO.6: 5 residues within 4Å: Chain F: Q.49, C.93, H.134, E.135, H.138 4 PLIP interactions: 3 interactions with chain F, 1 Ligand-Water interactions Metal complexes: F:C.93, F:H.134, F:H.138, H2O.117 CO.7: 4 residues within 4Å: Chain G: Q.49, C.93, H.134, H.138 4 PLIP interactions: 3 interactions with chain G, 1 Ligand-Water interactions Metal complexes: G:C.93, G:H.134, G:H.138, H2O.130 CO.8: 5 residues within 4Å: Chain H: Q.49, C.93, H.134, E.135, H.138 4 PLIP interactions: 3 interactions with chain H, 1 Ligand-Water interactions Metal complexes: H:C.93, H:H.134, H:H.138, H2O.145 CO.9: 4 residues within 4Å: Chain I: Q.49, C.93, H.134, H.138 4 PLIP interactions: 3 interactions with chain I, 1 Ligand-Water interactions Metal complexes: I:C.93, I:H.134, I:H.138, H2O.161 CO.10: 4 residues within 4Å: Chain J: Q.49, C.93, H.134, H.138 4 PLIP interactions: 3 interactions with chain J, 1 Ligand-Water interactions Metal complexes: J:C.93, J:H.134, J:H.138, H2O.177

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kumar, A. et al., Crystals of peptide deformylase from Plasmodium falciparum reveal critical characteristics of the active site for drug design. Structure (2002)

Release Date

2002-03-13

Peptides

Peptide Deformylase: ABCDEFGHIJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

Peptide Deformylase