- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- homo-tetramer
- Ligands
- 17 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)
- 16 x NA: SODIUM ION(Non-functional Binders)
NA.6: 5 residues within 4Å:- Chain A: Y.100, D.201, F.601, N.604
- Ligands: 145.10
Ligand excluded by PLIPNA.7: 4 residues within 4Å:- Chain A: F.556, Y.559, P.560, L.562
Ligand excluded by PLIPNA.8: 5 residues within 4Å:- Chain A: F.931, P.932, L.967, M.968, T.970
Ligand excluded by PLIPNA.9: 4 residues within 4Å:- Chain A: S.647, E.650, L.670
- Ligands: DMS.33
Ligand excluded by PLIPNA.43: 5 residues within 4Å:- Chain B: Y.100, D.201, F.601, N.604
- Ligands: 145.47
Ligand excluded by PLIPNA.44: 4 residues within 4Å:- Chain B: F.556, Y.559, P.560, L.562
Ligand excluded by PLIPNA.45: 5 residues within 4Å:- Chain B: F.931, P.932, L.967, M.968, T.970
Ligand excluded by PLIPNA.46: 4 residues within 4Å:- Chain B: S.647, E.650, L.670
- Ligands: DMS.69
Ligand excluded by PLIPNA.78: 5 residues within 4Å:- Chain C: Y.100, D.201, F.601, N.604
- Ligands: 145.82
Ligand excluded by PLIPNA.79: 4 residues within 4Å:- Chain C: F.556, Y.559, P.560, L.562
Ligand excluded by PLIPNA.80: 5 residues within 4Å:- Chain C: F.931, P.932, L.967, M.968, T.970
Ligand excluded by PLIPNA.81: 4 residues within 4Å:- Chain C: S.647, E.650, L.670
- Ligands: DMS.104
Ligand excluded by PLIPNA.115: 5 residues within 4Å:- Chain D: Y.100, D.201, F.601, N.604
- Ligands: 145.119
Ligand excluded by PLIPNA.116: 4 residues within 4Å:- Chain D: F.556, Y.559, P.560, L.562
Ligand excluded by PLIPNA.117: 5 residues within 4Å:- Chain D: F.931, P.932, L.967, M.968, T.970
Ligand excluded by PLIPNA.118: 5 residues within 4Å:- Chain D: S.647, N.649, E.650, L.670
- Ligands: DMS.142
Ligand excluded by PLIP- 8 x 145: 2-nitrophenyl beta-D-galactopyranoside(Non-covalent)
145.10: 16 residues within 4Å:- Chain A: N.102, V.103, D.201, H.418, E.461, M.502, Y.503, Q.537, H.540, W.568, F.601, N.604, V.795, W.999
- Ligands: NA.6, 145.11
13 PLIP interactions:13 interactions with chain A- Hydrophobic interactions: A:V.795, A:W.999, A:W.999
- Hydrogen bonds: A:N.102, A:E.461, A:Q.537, A:F.601, A:N.604
- Water bridges: A:H.418, A:N.460, A:E.461, A:E.461
- Salt bridges: A:H.418
145.11: 10 residues within 4Å:- Chain A: N.102, T.104, D.598, R.599, F.601, V.795, E.797, R.800
- Chain D: R.282
- Ligands: 145.10
14 PLIP interactions:13 interactions with chain A, 1 interactions with chain D- Hydrophobic interactions: A:F.601, A:F.601, A:V.795
- Water bridges: A:T.104, A:T.104, A:T.104, A:T.104, A:T.104, A:D.598, A:R.800, A:R.800, A:R.800
- Salt bridges: A:R.800
- Hydrogen bonds: D:R.282
145.47: 16 residues within 4Å:- Chain B: N.102, V.103, D.201, H.418, E.461, M.502, Y.503, Q.537, H.540, W.568, F.601, N.604, V.795, W.999
- Ligands: NA.43, 145.48
14 PLIP interactions:14 interactions with chain B- Hydrophobic interactions: B:V.795, B:W.999, B:W.999
- Hydrogen bonds: B:N.102, B:D.201, B:E.461, B:Q.537, B:F.601, B:N.604
- Water bridges: B:H.418, B:H.418, B:N.460, B:E.461
- Salt bridges: B:H.418
145.48: 10 residues within 4Å:- Chain B: N.102, T.104, D.598, R.599, F.601, V.795, E.797, R.800
- Chain C: R.282
- Ligands: 145.47
14 PLIP interactions:13 interactions with chain B, 1 interactions with chain C- Hydrophobic interactions: B:F.601, B:F.601, B:V.795
- Water bridges: B:T.104, B:T.104, B:T.104, B:T.104, B:T.104, B:D.598, B:R.800, B:R.800, B:R.800
- Salt bridges: B:R.800
- Hydrogen bonds: C:R.282
145.82: 16 residues within 4Å:- Chain C: N.102, V.103, D.201, H.418, E.461, M.502, Y.503, Q.537, H.540, W.568, F.601, N.604, V.795, W.999
- Ligands: NA.78, 145.83
16 PLIP interactions:16 interactions with chain C- Hydrophobic interactions: C:V.795, C:W.999, C:W.999
- Hydrogen bonds: C:N.102, C:E.461, C:Y.503, C:Q.537, C:F.601, C:N.604
- Water bridges: C:D.201, C:H.391, C:H.418, C:N.460, C:E.461, C:E.461
- Salt bridges: C:H.418
145.83: 10 residues within 4Å:- Chain B: R.282
- Chain C: N.102, T.104, D.598, R.599, F.601, V.795, E.797, R.800
- Ligands: 145.82
12 PLIP interactions:10 interactions with chain C, 2 interactions with chain B- Hydrophobic interactions: C:F.601, C:V.795
- Hydrogen bonds: C:T.104, B:R.282
- Water bridges: C:T.104, C:T.104, C:T.104, C:D.598, C:R.800, C:R.800, B:R.282
- Salt bridges: C:R.800
145.119: 16 residues within 4Å:- Chain D: N.102, V.103, D.201, H.418, E.461, M.502, Y.503, Q.537, H.540, W.568, F.601, N.604, V.795, W.999
- Ligands: NA.115, 145.120
16 PLIP interactions:16 interactions with chain D- Hydrophobic interactions: D:V.795, D:W.999, D:W.999
- Hydrogen bonds: D:N.102, D:D.201, D:E.461, D:Y.503, D:Q.537, D:F.601, D:N.604
- Water bridges: D:D.201, D:H.391, D:H.418, D:H.418, D:N.460, D:E.461
145.120: 10 residues within 4Å:- Chain A: R.282
- Chain D: N.102, T.104, D.598, R.599, F.601, V.795, E.797, R.800
- Ligands: 145.119
12 PLIP interactions:11 interactions with chain D, 1 interactions with chain A- Hydrophobic interactions: D:F.601, D:V.795, D:V.795
- Hydrogen bonds: D:T.104, A:R.282
- Water bridges: D:T.104, D:T.104, D:T.104, D:R.800, D:R.800, D:R.800
- Salt bridges: D:R.800
- 107 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
DMS.12: 9 residues within 4Å:- Chain A: V.227, T.229, V.330, G.331, R.333, R.448, N.449, P.451, R.482
Ligand excluded by PLIPDMS.13: 5 residues within 4Å:- Chain A: R.557, H.622, Q.623, Q.625, Q.628
Ligand excluded by PLIPDMS.14: 5 residues within 4Å:- Chain A: K.380, N.383, F.626, Y.642, W.708
Ligand excluded by PLIPDMS.15: 6 residues within 4Å:- Chain A: P.32, F.33, W.36, D.45, A.327
- Ligands: DMS.34
Ligand excluded by PLIPDMS.16: 3 residues within 4Å:- Chain A: T.271, L.291, R.292
Ligand excluded by PLIPDMS.17: 5 residues within 4Å:- Chain A: E.314, H.316, G.320, L.322
- Ligands: MG.4
Ligand excluded by PLIPDMS.18: 4 residues within 4Å:- Chain A: R.505, E.508, P.1001, V.1003
Ligand excluded by PLIPDMS.19: 4 residues within 4Å:- Chain A: L.54, N.55, L.125, F.127
Ligand excluded by PLIPDMS.20: 5 residues within 4Å:- Chain A: E.334, V.335, R.336, P.480, S.481
Ligand excluded by PLIPDMS.21: 4 residues within 4Å:- Chain A: P.106, P.115, W.191
- Ligands: DMS.24
Ligand excluded by PLIPDMS.22: 5 residues within 4Å:- Chain A: I.576, P.584, W.585, S.586, R.973
Ligand excluded by PLIPDMS.23: 6 residues within 4Å:- Chain A: G.275, G.276, E.277, V.289, T.290, R.292
Ligand excluded by PLIPDMS.24: 4 residues within 4Å:- Chain A: G.593, D.594, T.595
- Ligands: DMS.21
Ligand excluded by PLIPDMS.25: 3 residues within 4Å:- Chain A: V.84, V.85, H.93
Ligand excluded by PLIPDMS.26: 2 residues within 4Å:- Chain A: K.621, W.717
Ligand excluded by PLIPDMS.27: 2 residues within 4Å:- Chain A: R.251, D.252
Ligand excluded by PLIPDMS.28: 5 residues within 4Å:- Chain A: F.231, N.232, D.233, F.235, E.334
Ligand excluded by PLIPDMS.29: 5 residues within 4Å:- Chain A: Y.105, P.106, I.107, T.108, P.596
Ligand excluded by PLIPDMS.30: 3 residues within 4Å:- Chain A: D.428, P.430
- Chain D: V.478
Ligand excluded by PLIPDMS.31: 3 residues within 4Å:- Chain A: H.93, G.94, Y.95
Ligand excluded by PLIPDMS.32: 4 residues within 4Å:- Chain A: Y.926, Y.962, R.973, L.976
Ligand excluded by PLIPDMS.33: 7 residues within 4Å:- Chain A: S.647, D.648, N.649, E.650, P.703, N.704
- Ligands: NA.9
Ligand excluded by PLIPDMS.34: 7 residues within 4Å:- Chain A: A.34, W.36, D.45, R.46, P.47, S.48
- Ligands: DMS.15
Ligand excluded by PLIPDMS.35: 5 residues within 4Å:- Chain A: E.57, W.58, R.59, L.125, T.126
Ligand excluded by PLIPDMS.36: 3 residues within 4Å:- Chain A: F.629, Q.718, W.720
Ligand excluded by PLIPDMS.37: 5 residues within 4Å:- Chain A: R.37, S.132, W.133, E.136, H.216
Ligand excluded by PLIPDMS.38: 4 residues within 4Å:- Chain A: Q.266, V.267, A.268, S.269
Ligand excluded by PLIPDMS.49: 8 residues within 4Å:- Chain B: T.229, V.330, G.331, R.333, R.448, N.449, P.451, R.482
Ligand excluded by PLIPDMS.50: 5 residues within 4Å:- Chain B: R.557, H.622, Q.623, Q.625, Q.628
Ligand excluded by PLIPDMS.51: 5 residues within 4Å:- Chain B: K.380, N.383, F.626, Y.642, W.708
Ligand excluded by PLIPDMS.52: 7 residues within 4Å:- Chain B: P.32, F.33, A.34, W.36, D.45, R.310, A.327
Ligand excluded by PLIPDMS.53: 3 residues within 4Å:- Chain B: T.271, L.291, R.292
Ligand excluded by PLIPDMS.54: 4 residues within 4Å:- Chain B: R.505, E.508, P.1001, V.1003
Ligand excluded by PLIPDMS.55: 6 residues within 4Å:- Chain B: L.54, N.55, G.56, E.57, W.58, L.125
Ligand excluded by PLIPDMS.56: 5 residues within 4Å:- Chain B: E.334, V.335, R.336, P.480, S.481
Ligand excluded by PLIPDMS.57: 3 residues within 4Å:- Chain B: P.106, P.115, W.191
Ligand excluded by PLIPDMS.58: 6 residues within 4Å:- Chain B: I.576, P.584, W.585, S.586, D.610, R.973
Ligand excluded by PLIPDMS.59: 6 residues within 4Å:- Chain B: G.275, G.276, E.277, V.289, T.290, R.292
Ligand excluded by PLIPDMS.60: 3 residues within 4Å:- Chain B: G.593, D.594, T.595
Ligand excluded by PLIPDMS.61: 4 residues within 4Å:- Chain B: T.83, V.84, V.85, H.93
Ligand excluded by PLIPDMS.62: 4 residues within 4Å:- Chain B: K.621, R.699, I.714, W.717
Ligand excluded by PLIPDMS.63: 3 residues within 4Å:- Chain B: L.250, R.251, D.252
Ligand excluded by PLIPDMS.64: 6 residues within 4Å:- Chain B: F.231, N.232, D.233, F.235, E.334, R.336
Ligand excluded by PLIPDMS.65: 4 residues within 4Å:- Chain B: P.106, I.107, T.108, P.596
Ligand excluded by PLIPDMS.66: 3 residues within 4Å:- Chain B: D.428, P.430
- Chain C: V.478
Ligand excluded by PLIPDMS.67: 3 residues within 4Å:- Chain B: H.93, G.94, Y.95
Ligand excluded by PLIPDMS.68: 4 residues within 4Å:- Chain B: Y.926, Y.962, R.973, H.974
Ligand excluded by PLIPDMS.69: 7 residues within 4Å:- Chain B: S.647, D.648, N.649, E.650, P.703, N.704
- Ligands: NA.46
Ligand excluded by PLIPDMS.70: 5 residues within 4Å:- Chain B: E.57, W.58, R.59, L.125, T.126
Ligand excluded by PLIPDMS.71: 5 residues within 4Å:- Chain B: R.37, S.132, W.133, E.136, H.216
Ligand excluded by PLIPDMS.72: 5 residues within 4Å:- Chain B: S.923, Y.926, R.961, Y.962, A.978
Ligand excluded by PLIPDMS.73: 4 residues within 4Å:- Chain B: V.267, N.294, V.295, E.296
Ligand excluded by PLIPDMS.84: 9 residues within 4Å:- Chain C: T.229, V.330, G.331, R.333, R.448, N.449, H.450, P.451, R.482
Ligand excluded by PLIPDMS.85: 5 residues within 4Å:- Chain C: R.557, H.622, Q.623, Q.625, Q.628
Ligand excluded by PLIPDMS.86: 5 residues within 4Å:- Chain C: K.380, N.383, F.626, Y.642, W.708
Ligand excluded by PLIPDMS.87: 7 residues within 4Å:- Chain C: P.32, F.33, A.34, W.36, D.45, R.310, A.327
Ligand excluded by PLIPDMS.88: 4 residues within 4Å:- Chain C: T.271, T.290, L.291, R.292
Ligand excluded by PLIPDMS.89: 4 residues within 4Å:- Chain C: R.505, E.508, P.1001, V.1003
Ligand excluded by PLIPDMS.90: 4 residues within 4Å:- Chain C: L.54, N.55, E.57, L.125
Ligand excluded by PLIPDMS.91: 4 residues within 4Å:- Chain C: E.334, V.335, R.336, P.480
Ligand excluded by PLIPDMS.92: 3 residues within 4Å:- Chain C: P.106, P.115, W.191
Ligand excluded by PLIPDMS.93: 5 residues within 4Å:- Chain C: I.576, P.584, W.585, S.586, R.973
Ligand excluded by PLIPDMS.94: 5 residues within 4Å:- Chain C: G.275, G.276, V.289, T.290, R.292
Ligand excluded by PLIPDMS.95: 3 residues within 4Å:- Chain C: G.593, D.594, T.595
Ligand excluded by PLIPDMS.96: 3 residues within 4Å:- Chain C: V.84, V.85, H.93
Ligand excluded by PLIPDMS.97: 3 residues within 4Å:- Chain C: K.621, I.714, W.717
Ligand excluded by PLIPDMS.98: 3 residues within 4Å:- Chain C: L.250, R.251, D.252
Ligand excluded by PLIPDMS.99: 6 residues within 4Å:- Chain C: F.231, N.232, D.233, F.235, E.334, R.336
Ligand excluded by PLIPDMS.100: 4 residues within 4Å:- Chain C: P.106, I.107, T.108, P.596
Ligand excluded by PLIPDMS.101: 3 residues within 4Å:- Chain B: W.474
- Chain C: D.428, P.430
Ligand excluded by PLIPDMS.102: 3 residues within 4Å:- Chain C: H.93, G.94, Y.95
Ligand excluded by PLIPDMS.103: 4 residues within 4Å:- Chain C: Y.926, P.928, Y.962, R.973
Ligand excluded by PLIPDMS.104: 7 residues within 4Å:- Chain C: S.647, D.648, N.649, E.650, P.703, N.704
- Ligands: NA.81
Ligand excluded by PLIPDMS.105: 6 residues within 4Å:- Chain C: A.34, W.36, D.45, R.46, P.47, S.48
Ligand excluded by PLIPDMS.106: 4 residues within 4Å:- Chain C: F.629, R.630, Q.718, W.720
Ligand excluded by PLIPDMS.107: 5 residues within 4Å:- Chain C: R.37, Q.50, S.132, W.133, H.216
Ligand excluded by PLIPDMS.108: 4 residues within 4Å:- Chain C: V.267, N.294, V.295, E.296
Ligand excluded by PLIPDMS.109: 2 residues within 4Å:- Chain C: Q.266, A.268
Ligand excluded by PLIPDMS.110: 5 residues within 4Å:- Chain C: L.134, Q.135, E.136, G.137, T.219
Ligand excluded by PLIPDMS.121: 9 residues within 4Å:- Chain D: T.229, V.330, G.331, R.333, R.448, N.449, H.450, P.451, R.482
Ligand excluded by PLIPDMS.122: 5 residues within 4Å:- Chain D: R.557, H.622, Q.623, Q.625, Q.628
Ligand excluded by PLIPDMS.123: 5 residues within 4Å:- Chain D: K.380, N.383, F.626, Y.642, W.708
Ligand excluded by PLIPDMS.124: 8 residues within 4Å:- Chain D: P.32, F.33, A.34, W.36, D.45, R.310, A.327
- Ligands: DMS.143
Ligand excluded by PLIPDMS.125: 3 residues within 4Å:- Chain D: T.271, L.291, R.292
Ligand excluded by PLIPDMS.126: 4 residues within 4Å:- Chain D: E.314, H.316, G.320
- Ligands: DMS.146
Ligand excluded by PLIPDMS.127: 4 residues within 4Å:- Chain D: R.505, E.508, P.1001, V.1003
Ligand excluded by PLIPDMS.128: 6 residues within 4Å:- Chain D: L.54, N.55, G.56, E.57, W.58, L.125
Ligand excluded by PLIPDMS.129: 4 residues within 4Å:- Chain D: E.334, V.335, R.336, P.480
Ligand excluded by PLIPDMS.130: 4 residues within 4Å:- Chain D: P.106, P.115, W.191
- Ligands: DMS.133
Ligand excluded by PLIPDMS.131: 5 residues within 4Å:- Chain D: I.576, P.584, W.585, S.586, R.973
Ligand excluded by PLIPDMS.132: 6 residues within 4Å:- Chain D: G.275, G.276, E.277, V.289, T.290, R.292
Ligand excluded by PLIPDMS.133: 4 residues within 4Å:- Chain D: G.593, D.594, T.595
- Ligands: DMS.130
Ligand excluded by PLIPDMS.134: 4 residues within 4Å:- Chain D: T.83, V.84, V.85, H.93
Ligand excluded by PLIPDMS.135: 2 residues within 4Å:- Chain D: K.621, W.717
Ligand excluded by PLIPDMS.136: 3 residues within 4Å:- Chain D: L.250, R.251, D.252
Ligand excluded by PLIPDMS.137: 6 residues within 4Å:- Chain D: F.231, N.232, D.233, F.235, E.334, R.336
Ligand excluded by PLIPDMS.138: 5 residues within 4Å:- Chain D: Y.105, P.106, I.107, T.108, P.596
Ligand excluded by PLIPDMS.139: 3 residues within 4Å:- Chain A: H.226, V.478
- Chain D: D.428
Ligand excluded by PLIPDMS.140: 3 residues within 4Å:- Chain D: H.93, G.94, Y.95
Ligand excluded by PLIPDMS.141: 5 residues within 4Å:- Chain D: Y.926, Y.962, R.973, H.974, L.976
Ligand excluded by PLIPDMS.142: 7 residues within 4Å:- Chain D: S.647, D.648, N.649, E.650, P.703, N.704
- Ligands: NA.118
Ligand excluded by PLIPDMS.143: 7 residues within 4Å:- Chain D: A.34, W.36, D.45, R.46, P.47, S.48
- Ligands: DMS.124
Ligand excluded by PLIPDMS.144: 4 residues within 4Å:- Chain D: F.629, R.630, Q.718, W.720
Ligand excluded by PLIPDMS.145: 4 residues within 4Å:- Chain D: S.923, Y.926, R.961, Y.962
Ligand excluded by PLIPDMS.146: 3 residues within 4Å:- Chain D: G.320, L.322
- Ligands: DMS.126
Ligand excluded by PLIPDMS.147: 5 residues within 4Å:- Chain D: Q.49, Q.50, D.130, S.132, W.133
Ligand excluded by PLIPDMS.148: 6 residues within 4Å:- Chain D: W.133, L.134, Q.135, E.136, G.137, S.174
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Juers, D.H. et al., A Structural View of the Action of Escherichia Coli (Lacz) Beta-Galactosidase. Biochemistry (2001)
- Release Date
- 2001-12-07
- Peptides
- Beta-Galactosidase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- homo-tetramer
- Ligands
- 17 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)
- 16 x NA: SODIUM ION(Non-functional Binders)
- 8 x 145: 2-nitrophenyl beta-D-galactopyranoside(Non-covalent)
- 107 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Juers, D.H. et al., A Structural View of the Action of Escherichia Coli (Lacz) Beta-Galactosidase. Biochemistry (2001)
- Release Date
- 2001-12-07
- Peptides
- Beta-Galactosidase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D