SMTL ID : 1jz6.1

E. COLI (lacZ) BETA-GALACTOSIDASE IN COMPLEX WITH GALACTO-TETRAZOLE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-tetramer

Ligands

4 x GTZ: (5R, 6S, 7S, 8S)-5-HYDROXYMETHYL-6,7,8-TRIHYDROXY-TETRAZOLO[1,5-A]PIPERIDINE(Non-covalent)

GTZ.1: 14 residues within 4Å: Chain A: N.102, D.201, H.391, N.460, E.461, M.502, Y.503, E.537, H.540, W.568, N.604, W.999 Ligands: MG.2, NA.5 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:N.102, A:H.391, A:N.460, A:E.461 Water bridges: A:D.201, A:E.461, A:E.461 GTZ.28: 13 residues within 4Å: Chain B: N.102, D.201, H.391, N.460, E.461, M.502, Y.503, E.537, H.540, W.568, N.604, W.999 Ligands: NA.31 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:N.102, B:H.391, B:N.460, B:E.461 Water bridges: B:D.201, B:D.201, B:D.201 GTZ.52: 13 residues within 4Å: Chain C: N.102, D.201, H.391, N.460, E.461, M.502, Y.503, E.537, H.540, W.568, N.604, W.999 Ligands: NA.55 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:N.102, C:H.391, C:N.460, C:E.461, C:Y.503 Water bridges: C:D.201, C:D.201, C:D.201 GTZ.78: 13 residues within 4Å: Chain D: D.201, H.391, N.460, E.461, M.502, Y.503, E.537, H.540, W.568, F.601, N.604, W.999 Ligands: NA.82 8 PLIP interactions: 8 interactions with chain D Hydrogen bonds: D:N.102, D:H.391, D:N.460, D:E.461, D:Y.503 Water bridges: D:D.201, D:D.201, D:D.201

13 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.2: 5 residues within 4Å: Chain A: N.102, E.416, H.418, E.461 Ligands: GTZ.1 6 PLIP interactions: 3 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.416, A:H.418, A:E.461, H2O.1, H2O.3, H2O.6 MG.3: 6 residues within 4Å: Chain A: D.15, N.18, V.21, Y.161, Q.163, D.193 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.15, A:N.18, A:V.21, A:D.193, A:D.193 MG.4: 1 residues within 4Å: Ligands: DMS.14 No protein-ligand interaction detected (PLIP) MG.8: 5 residues within 4Å: Chain A: S.647, N.649, E.650, L.670 Ligands: DMS.25 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:S.647, A:E.650, A:L.670, H2O.24 MG.29: 3 residues within 4Å: Chain B: E.416, H.418, E.461 6 PLIP interactions: 3 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:E.416, B:H.418, B:E.461, H2O.31, H2O.34, H2O.37 MG.30: 6 residues within 4Å: Chain B: D.15, N.18, V.21, Y.161, Q.163, D.193 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.15, B:N.18, B:V.21, B:D.193 MG.34: 5 residues within 4Å: Chain B: S.647, D.648, E.650, L.670 Ligands: DMS.50 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:S.647, B:E.650, B:L.670, H2O.54, H2O.56 MG.53: 3 residues within 4Å: Chain C: E.416, H.418, E.461 6 PLIP interactions: 3 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:E.416, C:H.418, C:E.461, H2O.60, H2O.62, H2O.65 MG.54: 5 residues within 4Å: Chain C: D.15, N.18, V.21, Q.163, D.193 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:D.15, C:N.18, C:V.21, C:D.193 MG.57: 6 residues within 4Å: Chain C: S.647, D.648, N.649, E.650, L.670 Ligands: DMS.73 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:S.647, C:E.650, C:L.670, H2O.82 MG.79: 3 residues within 4Å: Chain D: E.416, H.418, E.461 6 PLIP interactions: 3 interactions with chain D, 3 Ligand-Water interactions Metal complexes: D:E.416, D:H.418, D:E.461, H2O.88, H2O.90, H2O.93 MG.80: 6 residues within 4Å: Chain D: D.15, N.18, V.21, Y.161, Q.163, D.193 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:D.15, D:N.18, D:V.21, D:D.193 MG.81: 1 residues within 4Å: Chain D: E.314 No protein-ligand interaction detected (PLIP)

11 x NA: SODIUM ION(Non-functional Binders)

NA.5: 5 residues within 4Å: Chain A: Y.100, D.201, F.601, N.604 Ligands: GTZ.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.201, A:N.604 NA.6: 4 residues within 4Å: Chain A: F.556, Y.559, P.560, L.562 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.562 NA.7: 5 residues within 4Å: Chain A: F.931, P.932, L.967, M.968, T.970 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.967 NA.31: 5 residues within 4Å: Chain B: Y.100, D.201, F.601, N.604 Ligands: GTZ.28 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.201, B:N.604 NA.32: 4 residues within 4Å: Chain B: F.556, Y.559, P.560, L.562 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:F.556, B:L.562 NA.33: 5 residues within 4Å: Chain B: F.931, P.932, L.967, M.968, T.970 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:T.970 NA.55: 5 residues within 4Å: Chain C: Y.100, D.201, F.601, N.604 Ligands: GTZ.52 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:Y.100, C:N.604, C:N.604 NA.56: 4 residues within 4Å: Chain C: F.556, Y.559, P.560, L.562 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:Y.559, C:L.562 NA.82: 5 residues within 4Å: Chain D: Y.100, D.201, F.601, N.604 Ligands: GTZ.78 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:Y.100, D:N.604, D:N.604 NA.83: 4 residues within 4Å: Chain D: F.556, Y.559, P.560, L.562 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:Y.559, D:L.562 NA.84: 5 residues within 4Å: Chain D: F.931, P.932, L.967, M.968, T.970 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:M.968

74 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.9: 8 residues within 4Å: Chain A: T.229, V.330, G.331, R.333, N.449, H.450, P.451, R.482 Ligand excluded by PLIP DMS.10: 5 residues within 4Å: Chain A: R.557, H.622, Q.623, Q.625, Q.628 Ligand excluded by PLIP DMS.11: 5 residues within 4Å: Chain A: K.380, N.383, F.626, Y.642, W.708 Ligand excluded by PLIP DMS.12: 5 residues within 4Å: Chain A: P.32, F.33, W.36, D.45, A.327 Ligand excluded by PLIP DMS.13: 4 residues within 4Å: Chain A: T.271, T.290, L.291, R.292 Ligand excluded by PLIP DMS.14: 5 residues within 4Å: Chain A: E.314, H.316, G.320, L.322 Ligands: MG.4 Ligand excluded by PLIP DMS.15: 4 residues within 4Å: Chain A: R.505, E.508, P.1001, V.1003 Ligand excluded by PLIP DMS.16: 4 residues within 4Å: Chain A: L.54, N.55, L.125, F.127 Ligand excluded by PLIP DMS.17: 3 residues within 4Å: Chain A: E.334, V.335, R.336 Ligand excluded by PLIP DMS.18: 3 residues within 4Å: Chain A: P.106, P.115, W.191 Ligand excluded by PLIP DMS.19: 4 residues within 4Å: Chain A: I.576, W.585, S.586, R.973 Ligand excluded by PLIP DMS.20: 6 residues within 4Å: Chain A: G.275, G.276, E.277, V.289, T.290, R.292 Ligand excluded by PLIP DMS.21: 3 residues within 4Å: Chain A: V.84, V.85, H.93 Ligand excluded by PLIP DMS.22: 4 residues within 4Å: Chain A: F.231, N.232, F.235, E.334 Ligand excluded by PLIP DMS.23: 4 residues within 4Å: Chain A: D.428, P.430 Chain D: R.448, V.478 Ligand excluded by PLIP DMS.24: 3 residues within 4Å: Chain A: H.93, G.94, Y.95 Ligand excluded by PLIP DMS.25: 7 residues within 4Å: Chain A: S.647, D.648, N.649, E.650, P.703, N.704 Ligands: MG.8 Ligand excluded by PLIP DMS.26: 6 residues within 4Å: Chain A: A.34, W.36, D.45, R.46, P.47, S.48 Ligand excluded by PLIP DMS.27: 4 residues within 4Å: Chain A: S.132, W.133, E.136, H.216 Ligand excluded by PLIP DMS.35: 9 residues within 4Å: Chain B: T.229, V.330, G.331, R.333, R.448, N.449, H.450, P.451, R.482 Ligand excluded by PLIP DMS.36: 5 residues within 4Å: Chain B: R.557, H.622, Q.623, Q.625, Q.628 Ligand excluded by PLIP DMS.37: 5 residues within 4Å: Chain B: K.380, N.383, F.626, Y.642, W.708 Ligand excluded by PLIP DMS.38: 7 residues within 4Å: Chain B: P.32, F.33, A.34, W.36, D.45, R.310, A.327 Ligand excluded by PLIP DMS.39: 4 residues within 4Å: Chain B: T.271, T.290, L.291, R.292 Ligand excluded by PLIP DMS.40: 5 residues within 4Å: Chain B: R.505, E.508, P.1001, V.1003, Q.1008 Ligand excluded by PLIP DMS.41: 5 residues within 4Å: Chain B: L.54, N.55, E.57, W.58, L.125 Ligand excluded by PLIP DMS.42: 4 residues within 4Å: Chain B: E.334, V.335, R.336, P.480 Ligand excluded by PLIP DMS.43: 5 residues within 4Å: Chain B: I.576, P.584, W.585, S.586, R.973 Ligand excluded by PLIP DMS.44: 5 residues within 4Å: Chain B: G.275, G.276, V.289, T.290, R.292 Ligand excluded by PLIP DMS.45: 3 residues within 4Å: Chain B: V.84, V.85, H.93 Ligand excluded by PLIP DMS.46: 4 residues within 4Å: Chain B: E.249, L.250, R.251, D.252 Ligand excluded by PLIP DMS.47: 5 residues within 4Å: Chain B: F.231, N.232, D.233, F.235, E.334 Ligand excluded by PLIP DMS.48: 3 residues within 4Å: Chain B: H.93, G.94, Y.95 Ligand excluded by PLIP DMS.49: 3 residues within 4Å: Chain B: Y.926, Y.962, R.973 Ligand excluded by PLIP DMS.50: 7 residues within 4Å: Chain B: S.647, D.648, N.649, E.650, P.703, N.704 Ligands: MG.34 Ligand excluded by PLIP DMS.51: 3 residues within 4Å: Chain B: V.267, N.294, E.296 Ligand excluded by PLIP DMS.58: 9 residues within 4Å: Chain C: V.227, T.229, V.330, G.331, R.333, R.448, N.449, P.451, R.482 Ligand excluded by PLIP DMS.59: 5 residues within 4Å: Chain C: R.557, H.622, Q.623, Q.625, Q.628 Ligand excluded by PLIP DMS.60: 5 residues within 4Å: Chain C: K.380, N.383, F.626, Y.642, W.708 Ligand excluded by PLIP DMS.61: 7 residues within 4Å: Chain C: P.32, F.33, W.36, D.45, R.310, A.327 Ligands: DMS.74 Ligand excluded by PLIP DMS.62: 3 residues within 4Å: Chain C: T.271, L.291, R.292 Ligand excluded by PLIP DMS.63: 4 residues within 4Å: Chain C: R.505, E.508, P.1001, V.1003 Ligand excluded by PLIP DMS.64: 3 residues within 4Å: Chain C: E.334, V.335, R.336 Ligand excluded by PLIP DMS.65: 5 residues within 4Å: Chain C: I.576, P.584, W.585, S.586, R.973 Ligand excluded by PLIP DMS.66: 6 residues within 4Å: Chain C: G.275, G.276, E.277, V.289, T.290, R.292 Ligand excluded by PLIP DMS.67: 3 residues within 4Å: Chain C: V.84, V.85, H.93 Ligand excluded by PLIP DMS.68: 3 residues within 4Å: Chain C: K.621, I.714, W.717 Ligand excluded by PLIP DMS.69: 6 residues within 4Å: Chain C: F.231, N.232, D.233, F.235, E.334, R.336 Ligand excluded by PLIP DMS.70: 5 residues within 4Å: Chain C: Y.105, P.106, I.107, T.108, P.596 Ligand excluded by PLIP DMS.71: 3 residues within 4Å: Chain C: H.93, G.94, Y.95 Ligand excluded by PLIP DMS.72: 4 residues within 4Å: Chain C: Y.926, Y.962, R.973, L.976 Ligand excluded by PLIP DMS.73: 7 residues within 4Å: Chain C: S.647, D.648, N.649, E.650, P.703, N.704 Ligands: MG.57 Ligand excluded by PLIP DMS.74: 7 residues within 4Å: Chain C: A.34, W.36, D.45, R.46, P.47, S.48 Ligands: DMS.61 Ligand excluded by PLIP DMS.75: 5 residues within 4Å: Chain C: R.37, Q.50, S.132, W.133, H.216 Ligand excluded by PLIP DMS.76: 4 residues within 4Å: Chain C: V.267, N.294, V.295, E.296 Ligand excluded by PLIP DMS.77: 3 residues within 4Å: Chain C: Q.266, V.267, A.268 Ligand excluded by PLIP DMS.85: 8 residues within 4Å: Chain D: T.229, V.330, G.331, R.448, N.449, H.450, P.451, R.482 Ligand excluded by PLIP DMS.86: 5 residues within 4Å: Chain D: R.557, H.622, Q.623, Q.625, Q.628 Ligand excluded by PLIP DMS.87: 5 residues within 4Å: Chain D: K.380, N.383, F.626, Y.642, W.708 Ligand excluded by PLIP DMS.88: 6 residues within 4Å: Chain D: P.32, F.33, W.36, D.45, A.327 Ligands: DMS.98 Ligand excluded by PLIP DMS.89: 4 residues within 4Å: Chain D: T.271, T.290, L.291, R.292 Ligand excluded by PLIP DMS.90: 4 residues within 4Å: Chain D: E.314, H.316, G.320 Ligands: DMS.100 Ligand excluded by PLIP DMS.91: 5 residues within 4Å: Chain D: R.505, E.508, P.1001, V.1003, Q.1008 Ligand excluded by PLIP DMS.92: 5 residues within 4Å: Chain D: S.53, L.54, N.55, G.56, E.57 Ligand excluded by PLIP DMS.93: 3 residues within 4Å: Chain D: E.334, V.335, R.336 Ligand excluded by PLIP DMS.94: 5 residues within 4Å: Chain D: I.576, P.584, W.585, S.586, R.973 Ligand excluded by PLIP DMS.95: 6 residues within 4Å: Chain D: G.275, G.276, E.277, V.289, T.290, R.292 Ligand excluded by PLIP DMS.96: 3 residues within 4Å: Chain D: G.593, D.594, T.595 Ligand excluded by PLIP DMS.97: 3 residues within 4Å: Chain D: V.84, V.85, H.93 Ligand excluded by PLIP DMS.98: 6 residues within 4Å: Chain D: A.34, W.36, D.45, R.46, P.47 Ligands: DMS.88 Ligand excluded by PLIP DMS.99: 4 residues within 4Å: Chain D: N.102, D.598, F.601, V.795 Ligand excluded by PLIP DMS.100: 3 residues within 4Å: Chain D: G.320, L.322 Ligands: DMS.90 Ligand excluded by PLIP DMS.101: 4 residues within 4Å: Chain D: Q.49, D.130, S.132, W.133 Ligand excluded by PLIP DMS.102: 5 residues within 4Å: Chain D: W.133, L.134, Q.135, E.136, S.174 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Juers, D.H. et al., A Structural View of the Action of Escherichia Coli (Lacz) Beta-Galactosidase. Biochemistry (2001)

Release Date

2001-12-07

Peptides

Beta-Galactosidase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Beta-Galactosidase

Related Entries With Identical Sequence