- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.85 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x SO4: SULFATE ION(Non-functional Binders)
- 4 x IR3: IRIDIUM (III) ION(Non-functional Binders)(Non-covalent)
IR3.3: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)IR3.4: 3 residues within 4Å:- Chain B: D.65, E.66
- Ligands: SO4.1
No protein-ligand interaction detected (PLIP)IR3.5: 2 residues within 4Å:- Chain A: E.66, N.67
No protein-ligand interaction detected (PLIP)IR3.6: 4 residues within 4Å:- Chain A: K.20, H.31
- Ligands: NI.7, GOL.11
No protein-ligand interaction detected (PLIP)- 2 x NI: NICKEL (II) ION(Non-covalent)
- 3 x GOL: GLYCEROL(Non-functional Binders)
GOL.9: 9 residues within 4Å:- Chain A: V.3, H.19, I.26, G.29, G.30, E.80, H.91, D.93
- Ligands: GOL.11
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:H.19, A:G.29, A:H.91, A:D.93
GOL.10: 3 residues within 4Å:- Chain A: M.1, H.89, I.90
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:M.1, A:I.90
GOL.11: 8 residues within 4Å:- Chain A: V.17, K.18, H.19, K.20, G.29, E.49
- Ligands: IR3.6, GOL.9
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.18, A:K.20
- 5 x ACY: ACETIC ACID(Non-functional Binders)
ACY.12: 5 residues within 4Å:- Chain A: V.81, V.82, K.83, P.123
- Chain B: N.67
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.83, A:K.83
ACY.13: 10 residues within 4Å:- Chain B: S.5, Y.27, L.78, E.80, D.93, I.95, F.122, P.123, N.124, V.125
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:Y.27, B:F.122, B:V.125
- Hydrogen bonds: B:S.5, B:S.5
- Water bridges: B:N.124
ACY.14: 3 residues within 4Å:- Chain A: E.10, N.11, W.110
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:W.110
- Hydrogen bonds: A:E.10, A:N.11
ACY.15: 3 residues within 4Å:- Chain B: E.10, N.11, W.110
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:W.110
- Hydrogen bonds: B:E.10, B:N.11
ACY.16: 4 residues within 4Å:- Chain B: H.19, E.80, H.91, F.122
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:H.19, B:D.93
- Salt bridges: B:H.91
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wang, S. et al., Structure of a Nudix protein from Pyrobaculum aerophilum reveals a dimer with two intersubunit beta-sheets. Acta Crystallogr.,Sect.D (2002)
- Release Date
- 2002-04-03
- Peptides
- NUDIX HOMOLOG: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.85 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x SO4: SULFATE ION(Non-functional Binders)
- 4 x IR3: IRIDIUM (III) ION(Non-functional Binders)(Non-covalent)
- 2 x NI: NICKEL (II) ION(Non-covalent)
- 3 x GOL: GLYCEROL(Non-functional Binders)
- 5 x ACY: ACETIC ACID(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wang, S. et al., Structure of a Nudix protein from Pyrobaculum aerophilum reveals a dimer with two intersubunit beta-sheets. Acta Crystallogr.,Sect.D (2002)
- Release Date
- 2002-04-03
- Peptides
- NUDIX HOMOLOG: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B