SMTL ID : 1k3w.1

Crystal structure of a trapped reaction intermediate of the DNA Repair Enzyme Endonuclease VIII with DNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.42 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain C: C.237, C.240, C.257, C.260 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.237, C:C.240, C:C.257, C:C.260

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain C: R.8, N.12, G.213 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:N.12 Water bridges: C:R.8, C:N.12 Salt bridges: C:R.8 SO4.3: 3 residues within 4Å: Chain C: K.140, A.191, D.195 3 PLIP interactions: 3 interactions with chain C Water bridges: C:K.140, C:D.195 Salt bridges: C:K.140 SO4.4: 2 residues within 4Å: Chain C: N.190, A.191 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:A.191 Water bridges: C:L.189

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zharkov, D.O. et al., Structural analysis of an Escherichia coli endonuclease VIII covalent reaction intermediate. EMBO J. (2002)

Release Date

2002-10-04

Peptides

Endonuclease VIII: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
A

Endonuclease VIII

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