SMTL ID : 1k3y.1

Crystal Structure Analysis of human Glutathione S-transferase with S-hexyl glutatione and glycerol at 1.3 Angstrom

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

homo-dimer

Ligands

2 x GTX: S-HEXYLGLUTATHIONE(Non-covalent)

GTX.1: 17 residues within 4Å: Chain A: Y.8, R.14, R.44, Q.53, V.54, P.55, Q.66, T.67, L.106, V.110, M.207, L.212, F.219, F.221 Chain B: D.100, R.130 Ligands: GOL.3 18 PLIP interactions: 3 interactions with chain B, 15 interactions with chain A Hydrogen bonds: B:D.100, A:Q.53, A:V.54, A:V.54, A:Q.66, A:Q.66, A:T.67, A:T.67 Salt bridges: B:K.126, B:R.130, A:R.44 Hydrophobic interactions: A:V.110, A:L.212, A:F.221 Water bridges: A:R.14, A:R.44, A:V.54, A:R.68 GTX.4: 15 residues within 4Å: Chain A: D.100, R.130 Chain B: Y.8, R.14, R.44, Q.53, V.54, P.55, Q.66, T.67, L.106, V.110, M.207, F.219 Ligands: GOL.5 18 PLIP interactions: 16 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:V.110, B:F.219 Hydrogen bonds: B:Q.53, B:V.54, B:V.54, B:Q.66, B:Q.66, B:T.67, B:T.67, A:D.100 Water bridges: B:R.14, B:R.44, B:T.67, B:R.68, B:F.219 Salt bridges: B:R.14, B:R.44, A:R.130

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: T.67, R.68, L.71, I.95, E.96, A.99, R.154, H.158 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.99 Water bridges: A:E.96, A:R.154 GOL.3: 6 residues within 4Å: Chain A: R.14, R.68, E.103 Chain B: D.100 Ligands: GTX.1, GOL.5 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Water bridges: B:R.68, B:D.100 Hydrogen bonds: A:R.68, A:R.68 GOL.5: 6 residues within 4Å: Chain A: D.100 Chain B: R.14, R.68, E.103 Ligands: GOL.3, GTX.4 6 PLIP interactions: 4 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:R.68, B:R.68 Water bridges: B:D.100, B:D.100, A:R.68, A:D.100

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Le Trong, I. et al., 1.3-A resolution structure of human glutathione S-transferase with S-hexyl glutathione bound reveals possible extended ligandin binding site. Proteins (2002)

Release Date

2002-10-30

Peptides

GLUTATHIONE S-TRANSFERASE A1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

GLUTATHIONE S-TRANSFERASE A1

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