SMTL ID : 1k5c.1

Endopolygalacturonase I from Stereum purpureum at 0.96 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 0.96 Å

Oligo State

monomer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: N.91, N.92 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.92 Water bridges: A:K.88 NAG.2: 3 residues within 4Å: Chain A: N.160, N.161, N.182 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.160, A:N.182

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 3 residues within 4Å: Chain A: G.30, T.54, T.55 Ligand excluded by PLIP

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 4 residues within 4Å: Chain A: R.231, D.264, V.266, G.267 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.231, A:V.266 Water bridges: A:V.266, A:V.266 GOL.5: 5 residues within 4Å: Chain A: D.64, G.65, T.66, G.105, D.128 7 PLIP interactions: 7 interactions with chain A Water bridges: A:D.64, A:D.64, A:D.64, A:T.66, A:G.105, A:P.126, A:D.128

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shimizu, T. et al., Active-site architecture of endopolygalacturonase I from Stereum purpureum revealed by crystal structures in native and ligand-bound forms at atomic resolution. Biochemistry (2002)

Release Date

2002-06-05

Peptides

ENDOPOLYGALACTURONASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ENDOPOLYGALACTURONASE

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