SMTL ID : 1k6e.1

COMPLEX OF HYDROLYTIC HALOALKANE DEHALOGENASE LINB FROM SPHINGOMONAS PAUCIMOBILIS UT26 WITH 1,2-PROPANEDIOL (PRODUCT OF DEHALOGENATION OF 1,2-DIBROMOPROPANE) AT 1.85A

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

2 x BR: BROMIDE ION(Non-covalent)

BR.1: 10 residues within 4Å: Chain A: N.37, W.108, F.168, W.206, P.207, I.210 Ligands: CL.3, PGO.8, 1BP.9, 1BP.10 Ligand excluded by PLIP BR.2: 4 residues within 4Å: Chain A: T.215, P.216, A.217 Ligands: CL.4 Ligand excluded by PLIP

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 10 residues within 4Å: Chain A: N.37, W.108, F.168, W.206, P.207, I.210 Ligands: BR.1, PGO.8, 1BP.9, 1BP.10 Ligand excluded by PLIP CL.4: 4 residues within 4Å: Chain A: T.215, P.216, A.217 Ligands: BR.2 Ligand excluded by PLIP

3 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)

MG.5: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.6: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.7: 1 residues within 4Å: Chain A: D.69 No protein-ligand interaction detected (PLIP)

1 x PGO: S-1,2-PROPANEDIOL(Non-covalent)

PGO.8: 10 residues within 4Å: Chain A: D.107, F.142, F.150, I.210, L.247, H.271 Ligands: BR.1, CL.3, 1BP.9, 1BP.10 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.142, A:L.247

2 x 1BP: 1-BROMOPROPANE-2-OL(Non-covalent)

1BP.9: 9 residues within 4Å: Chain A: D.107, P.143, F.150, L.176, H.271 Ligands: BR.1, CL.3, PGO.8, 1BP.10 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:F.150 1BP.10: 12 residues within 4Å: Chain A: D.107, F.142, F.150, V.172, L.176, L.247, H.271, F.272 Ligands: BR.1, CL.3, PGO.8, 1BP.9 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Streltsov, V.A. et al., Haloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26: X-ray crystallographic studies of dehalogenation of brominated substrates. Biochemistry (2003)

Release Date

2003-08-19

Peptides

HALOALKANE DEHALOGENASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

HALOALKANE DEHALOGENASE

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