SMTL ID : 1k7w.1

Crystal Structure of S283A Duck Delta 2 Crystallin Mutant

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.96 Å

Oligo State

homo-tetramer

Ligands

4 x AS1: ARGININOSUCCINATE(Non-covalent)

AS1.1: 11 residues within 4Å: Chain A: S.29, R.115, N.116, V.119, Y.323, Q.328, K.331 Chain C: T.161, H.162 Chain D: T.281, N.291 14 PLIP interactions: 11 interactions with chain A, 2 interactions with chain D, 1 interactions with chain C Hydrophobic interactions: A:R.115, A:V.119, A:V.119 Hydrogen bonds: A:S.29, A:N.116, A:N.116, A:N.116, A:Y.323, A:Q.328, D:T.281, D:N.291 Water bridges: A:K.331 Salt bridges: A:K.331, C:H.162 AS1.2: 12 residues within 4Å: Chain B: S.29, H.91, R.115, N.116, V.119, Y.323, Q.328, K.331 Chain C: T.281, N.291 Chain D: T.161, H.162 19 PLIP interactions: 2 interactions with chain D, 16 interactions with chain B, 1 interactions with chain C Hydrogen bonds: D:T.161, B:S.29, B:R.115, B:N.116, B:N.116, B:N.116, B:Y.323, B:Y.323, B:Q.328, C:N.291 Salt bridges: D:H.162, B:K.331 Hydrophobic interactions: B:R.115, B:V.119 Water bridges: B:D.33, B:R.115, B:K.325, B:K.325, B:K.331 AS1.3: 13 residues within 4Å: Chain A: T.161, H.162 Chain B: T.281, N.291 Chain C: S.29, H.91, R.115, N.116, V.119, A.205, Y.323, Q.328, K.331 19 PLIP interactions: 17 interactions with chain C, 1 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: C:R.115, C:V.119, C:V.119 Hydrogen bonds: C:S.29, C:R.115, C:N.116, C:N.116, C:N.116, C:Y.323, C:Q.328, B:N.291 Water bridges: C:S.29, C:R.115, C:K.325, C:K.325, C:K.325, C:K.331 Salt bridges: C:K.331, A:H.162 AS1.4: 12 residues within 4Å: Chain A: T.281, N.291 Chain B: T.161, H.162 Chain D: S.29, H.91, R.115, N.116, V.119, Y.323, Q.328, K.331 20 PLIP interactions: 16 interactions with chain D, 3 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: D:R.115, D:V.119 Hydrogen bonds: D:S.29, D:R.115, D:N.116, D:N.116, D:N.116, D:Y.323, D:Y.323, D:Q.328, B:T.161, A:N.291 Water bridges: D:K.325, D:Q.328, D:K.331, D:K.331 Salt bridges: D:R.115, D:K.331, B:H.162, B:H.162

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sampaleanu, L.M. et al., Mutational analysis of duck delta 2 crystallin and the structure of an inactive mutant with bound substrate provide insight into the enzymatic mechanism of argininosuccinate lyase. J.Biol.Chem. (2002)

Release Date

2002-03-06

Peptides

delta 2 crystallin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

delta 2 crystallin