SMTL ID : 1k9d.1

The 1.7 A crystal structure of alpha-D-glucuronidase, a family-67 glycoside hydrolase from Bacillus stearothermophilus T-1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

26 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 9 residues within 4Å: Chain A: Y.91, Y.116, H.120, R.123, S.189, V.190, G.191, R.467, W.470 Ligand excluded by PLIP GOL.2: 7 residues within 4Å: Chain A: R.368, E.369, V.371, E.409, F.413, E.584, L.585 Ligand excluded by PLIP GOL.3: 9 residues within 4Å: Chain A: F.320, Y.322, R.335, D.364, Y.393, W.520, H.527, Y.535, W.540 Ligand excluded by PLIP GOL.4: 9 residues within 4Å: Chain A: Y.340, K.344, A.377, A.565, Q.566, Y.567, F.568, P.569 Ligands: GOL.10 Ligand excluded by PLIP GOL.5: 6 residues within 4Å: Chain A: K.15, S.19, L.21, L.125, E.129, I.131 Ligand excluded by PLIP GOL.6: 6 residues within 4Å: Chain A: D.554, T.556, L.578, H.590, H.591, V.592 Ligand excluded by PLIP GOL.7: 5 residues within 4Å: Chain A: I.166, V.174, Q.176, R.179, S.448 Ligand excluded by PLIP GOL.8: 4 residues within 4Å: Chain A: R.11, F.488, G.489, K.632 Ligand excluded by PLIP GOL.9: 8 residues within 4Å: Chain A: W.68, D.74, E.75, E.76, F.77, R.79, R.94, Y.105 Ligand excluded by PLIP GOL.10: 3 residues within 4Å: Chain A: Y.340, A.565 Ligands: GOL.4 Ligand excluded by PLIP GOL.11: 4 residues within 4Å: Chain A: E.40, K.181, T.227, Y.228 Ligand excluded by PLIP GOL.12: 6 residues within 4Å: Chain A: Y.664, R.665, G.668 Chain B: D.547, R.548, D.549 Ligand excluded by PLIP GOL.13: 2 residues within 4Å: Chain A: L.503, R.507 Ligand excluded by PLIP GOL.14: 9 residues within 4Å: Chain B: Y.91, Y.116, H.120, R.123, S.189, V.190, G.191, R.467, W.470 Ligand excluded by PLIP GOL.15: 7 residues within 4Å: Chain B: R.368, E.369, V.371, E.409, F.413, E.584, L.585 Ligand excluded by PLIP GOL.16: 9 residues within 4Å: Chain B: F.320, Y.322, R.335, D.364, Y.393, W.520, H.527, Y.535, W.540 Ligand excluded by PLIP GOL.17: 9 residues within 4Å: Chain B: Y.340, K.344, A.377, A.565, Q.566, Y.567, F.568, P.569 Ligands: GOL.23 Ligand excluded by PLIP GOL.18: 6 residues within 4Å: Chain B: K.15, S.19, L.21, L.125, E.129, I.131 Ligand excluded by PLIP GOL.19: 6 residues within 4Å: Chain B: D.554, T.556, L.578, H.590, H.591, V.592 Ligand excluded by PLIP GOL.20: 5 residues within 4Å: Chain B: I.166, V.174, Q.176, R.179, S.448 Ligand excluded by PLIP GOL.21: 4 residues within 4Å: Chain B: R.11, F.488, G.489, K.632 Ligand excluded by PLIP GOL.22: 8 residues within 4Å: Chain B: W.68, D.74, E.75, E.76, F.77, R.79, R.94, Y.105 Ligand excluded by PLIP GOL.23: 3 residues within 4Å: Chain B: Y.340, A.565 Ligands: GOL.17 Ligand excluded by PLIP GOL.24: 4 residues within 4Å: Chain B: E.40, K.181, T.227, Y.228 Ligand excluded by PLIP GOL.25: 6 residues within 4Å: Chain A: D.547, R.548, D.549 Chain B: Y.664, R.665, G.668 Ligand excluded by PLIP GOL.26: 2 residues within 4Å: Chain B: L.503, R.507 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Golan, G. et al., Crystal Structures of Geobacillus stearothermophilus {alpha}-Glucuronidase Complexed with Its Substrate and Products: MECHANISTIC IMPLICATIONS. J.Biol.Chem. (2004)

Release Date

2002-10-29

Peptides

alpha-D-glucuronidase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

alpha-D-glucuronidase

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