SMTL ID : 1kb4.1

Crystal Structure of VDR DNA-binding Domain Bound to a Canonical Direct Repeat with Three Base Pair Spacer (DR3) Response Element

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-dimer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain C: C.9, C.12, C.26, C.29 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.9, C:C.12, C:C.26, C:C.29 ZN.2: 4 residues within 4Å: Chain C: C.45, C.51, C.61, C.64 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.45, C:C.51, C:C.61, C:C.64 ZN.3: 4 residues within 4Å: Chain D: C.9, C.12, C.26, C.29 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.9, D:C.12, D:C.26, D:C.29 ZN.4: 4 residues within 4Å: Chain D: C.45, C.51, C.61, C.64 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.45, D:C.51, D:C.61, D:C.64

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shaffer, P.L. et al., Structural basis of VDR-DNA interactions on direct repeat response elements. EMBO J. (2002)

Release Date

2002-05-03

Peptides

Vitamin D3 Receptor: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
A

D
B

Vitamin D3 Receptor

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