SMTL ID : 1kbc.2 (1 other biounit)

PROCARBOXYPEPTIDASE TERNARY COMPLEX

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: D.59, G.91, I.92, G.93, D.95 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.59, A:G.91, A:G.93, A:D.95, H2O.1, H2O.1 CA.2: 6 residues within 4Å: Chain A: D.76, G.77, N.79, I.81, D.99, E.102 6 PLIP interactions: 6 interactions with chain A Metal complexes: A:D.76, A:G.77, A:N.79, A:I.81, A:D.99, A:E.102

2 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain A: H.69, D.71, H.84, H.97 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.69, A:D.71, A:H.84, A:H.97 ZN.4: 4 residues within 4Å: Chain A: H.119, H.123, H.129 Ligands: HLE.5 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.119, A:H.123, A:H.129

1 x HLE: 3-FORMYL-2-HYDROXY-5-METHYL-HEXANOIC ACID HYDROXYAMIDE(Non-covalent)

HLE.5: 14 residues within 4Å: Chain A: G.80, I.81, L.82, A.83, H.119, E.120, H.123, H.129, Y.138, P.139, N.140, Y.141 Ligands: ZN.4, RIN.6 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.82, A:A.83

1 x RIN: 3-AMINO-AZACYCLOTRIDECAN-2-ONE(Non-covalent)

RIN.6: 7 residues within 4Å: Chain A: G.80, L.82, Y.111, P.139, N.140, Y.141 Ligands: HLE.5 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.80, A:P.139, A:Y.141

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Betz, M. et al., 1.8-A crystal structure of the catalytic domain of human neutrophil collagenase (matrix metalloproteinase-8) complexed with a peptidomimetic hydroxamate primed-side inhibitor with a distinct selectivity profile. Eur.J.Biochem. (1997)

Release Date

1997-08-12

Peptides

NEUTROPHIL COLLAGENASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

NEUTROPHIL COLLAGENASE

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