SMTL ID : 1kcw.1

X-RAY CRYSTAL STRUCTURE OF HUMAN CERULOPLASMIN AT 3.0 ANGSTROMS

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

monomer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: N.119, I.1016 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.1016 Hydrogen bonds: A:N.119 NAG.2: 1 residues within 4Å: Chain A: N.743 No protein-ligand interaction detected (PLIP)

8 x CU: COPPER (II) ION(Non-covalent)

CU.3: 5 residues within 4Å: Chain A: V.275, H.276, C.319, H.324, L.329 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.276, A:C.319, A:H.324 CU.4: 5 residues within 4Å: Chain A: H.163, H.980, H.1020 Ligands: CU.5, O.11 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:H.163, A:H.980, A:H.1020, O.11 CU.5: 7 residues within 4Å: Chain A: H.103, H.161, H.978, H.1022 Ligands: CU.4, CU.6, O.11 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:H.103, A:H.161, A:H.1022, O.11 CU.6: 7 residues within 4Å: Chain A: H.101, H.103, H.978, H.980 Ligands: CU.5, O.11, O.12 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:H.101, A:H.978, A:H.980, O.12 CU.7: 4 residues within 4Å: Chain A: H.637, C.680, H.685, M.690 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.637, A:C.680, A:H.685 CU.8: 2 residues within 4Å: Chain A: H.602, D.684 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.602, A:D.684, A:D.684 CU.9: 6 residues within 4Å: Chain A: L.974, H.975, C.1021, V.1023, H.1026, M.1031 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.975, A:C.1021, A:H.1026 CU.10: 3 residues within 4Å: Chain A: E.935, H.940, D.1025 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.940, A:D.1025

2 x O: OXYGEN ATOM(Non-covalent)

O.11: 11 residues within 4Å: Chain A: H.101, H.103, H.161, H.163, H.978, H.980, H.1020, H.1022 Ligands: CU.4, CU.5, CU.6 No protein-ligand interaction detected (PLIP) O.12: 8 residues within 4Å: Chain A: H.101, S.102, H.103, Y.107, H.978, H.980, G.981 Ligands: CU.6 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.103, A:Y.107, A:G.981

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zaitseva, I. et al., The X-ray structure of human serum ceruloplasmin at 3.1 angstrom: Nature of the copper centres. J.Biol.Inorg.Chem. (1996)

Release Date

1997-02-12

Peptides

CERULOPLASMIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CERULOPLASMIN