SMTL ID : 1kdh.1

Binary Complex of Murine Terminal Deoxynucleotidyl Transferase with a Primer Single Stranded DNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

monomer

Ligands

1 x BRU- BRU- BRU- BRU: 5'-D(P*(BRU)P*(BRU)P*(BRU)P*(BRU))-3'(Non-covalent)

BRU-BRU-BRU-BRU.1: 25 residues within 4Å: Chain A: V.108, F.109, G.110, V.111, G.112, K.114, T.115, M.141, G.185, R.189, D.196, D.198, K.256, F.258, R.285, D.287, G.302, W.303, T.304, G.305, S.306, R.307, E.310 Ligands: MG.2, NA.3 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:R.307 Hydrogen bonds: A:R.189, A:R.189, A:R.307, A:R.314 Salt bridges: A:R.307 pi-Cation interactions: A:R.307

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 6 residues within 4Å: Chain A: D.196, D.198, D.287, W.303 Ligands: BRU-BRU-BRU-BRU.1, BRU-BRU-BRU-BRU.1 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.287

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 4 residues within 4Å: Chain A: T.106, V.108, V.111 Ligands: BRU-BRU-BRU-BRU.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.111, A:V.111

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Delarue, M. et al., Crystal structures of a template-independent DNA polymerase: murine terminal deoxynucleotidyltransferase. EMBO J. (2002)

Release Date

2002-05-13

Peptides

Terminal deoxynucleotidyltransferase short isoform: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Terminal deoxynucleotidyltransferase short isoform

Related Entries With Identical Sequence