SMTL ID : 1keg.1

Antibody 64M-2 Fab complexed with dTT(6-4)TT

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-1-1-mer

Ligands

1 x DT- 64T- DT- DT: 5'-D(*TP*(64T)P*TP*T)-3'(Non-covalent)

DT-64T-DT-DT.1: 16 residues within 4Å: Chain A: H.31, N.33, N.35, Y.37, K.55, G.96, S.97, L.98 Chain B: W.33, H.35, S.59, R.99, S.100, G.101, Y.105, A.106 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain B Salt bridges: A:H.31 Hydrophobic interactions: B:Y.105 Hydrogen bonds: B:R.99, B:S.100

1 x NI: NICKEL (II) ION(Non-covalent)

NI.2: 1 residues within 4Å: Chain A: D.1 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.1, A:D.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yokoyama, H. et al., Structure of the DNA (6-4) photoproduct dTT(6-4)TT in complex with the 64M-2 antibody Fab fragment implies increased antibody-binding affinity by the flanking nucleotides. Acta Crystallogr.,Sect.D (2012)

Release Date

2002-11-15

Peptides

Anti-(6-4) photoproduct antibody 64M-2 Fab (light chain): A
Anti-(6-4) photoproduct antibody 64M-2 Fab (heavy chain): B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

Anti-(6-4) photoproduct antibody 64M-2 Fab (light chain)

Anti-(6-4) photoproduct antibody 64M-2 Fab (heavy chain)