SMTL ID : 1kej.1

Crystal Structure of Murine Terminal Deoxynucleotidyl Transferase complexed with ddATP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

monomer

Ligands

2 x CO: COBALT (II) ION(Non-covalent)

CO.1: 4 residues within 4Å: Chain A: D.196, D.198 Ligands: CO.2, DAD.4 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.196, A:D.198 CO.2: 5 residues within 4Å: Chain A: D.196, D.198, D.287 Ligands: CO.1, DAD.4 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.196, A:D.198, A:D.287

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 4 residues within 4Å: Chain A: T.106, V.108, G.110, V.111 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.106, A:G.110, A:V.111

1 x DAD: 2',3'-DIDEOXYADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

DAD.4: 15 residues within 4Å: Chain A: G.185, G.186, R.189, K.191, G.194, H.195, D.196, D.198, A.250, K.256, G.302, R.307, N.327 Ligands: CO.1, CO.2 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:G.186, A:H.195, A:D.196, A:K.256, A:R.307, A:R.307 Salt bridges: A:R.189, A:K.191, A:R.307

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Delarue, M. et al., Crystal structures of a template-independent DNA polymerase: murine terminal deoxynucleotidyltransferase. EMBO J. (2002)

Release Date

2002-05-16

Peptides

Terminal deoxynucleotidyltransferase short isoform: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Terminal deoxynucleotidyltransferase short isoform

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