SMTL ID : 1khc.1

Crystal Structure of the PWWP Domain of Mammalian DNA Methyltransferase Dnmt3b

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

22 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.1: 3 residues within 4Å: Ligands: UNX.2, UNX.3, UNX.4 Ligand excluded by PLIP UNX.2: 6 residues within 4Å: Chain A: F.53, G.54, H.93 Ligands: UNX.1, UNX.3, UNX.4 Ligand excluded by PLIP UNX.3: 4 residues within 4Å: Chain A: G.56 Ligands: UNX.1, UNX.2, UNX.4 Ligand excluded by PLIP UNX.4: 7 residues within 4Å: Chain A: Q.51, W.52, F.53, G.56 Ligands: UNX.1, UNX.2, UNX.3 Ligand excluded by PLIP UNX.5: 2 residues within 4Å: Chain A: W.124 Ligands: UNX.6 Ligand excluded by PLIP UNX.6: 3 residues within 4Å: Chain A: E.123, W.124 Ligands: UNX.5 Ligand excluded by PLIP UNX.7: 3 residues within 4Å: Chain A: A.79 Ligands: UNX.8, UNX.9 Ligand excluded by PLIP UNX.8: 3 residues within 4Å: Chain A: A.79 Ligands: UNX.7, UNX.9 Ligand excluded by PLIP UNX.9: 3 residues within 4Å: Chain A: A.79 Ligands: UNX.7, UNX.8 Ligand excluded by PLIP UNX.10: 5 residues within 4Å: Chain A: M.31, K.97, R.101 Ligands: UNX.11, UNX.12 Ligand excluded by PLIP UNX.11: 2 residues within 4Å: Ligands: UNX.10, UNX.12 Ligand excluded by PLIP UNX.12: 5 residues within 4Å: Chain A: G.15, M.31, R.101 Ligands: UNX.10, UNX.11 Ligand excluded by PLIP UNX.13: 4 residues within 4Å: Chain A: E.96, K.97 Ligands: UNX.14, UNX.15 Ligand excluded by PLIP UNX.14: 4 residues within 4Å: Chain A: K.97, V.100 Ligands: UNX.13, UNX.15 Ligand excluded by PLIP UNX.15: 3 residues within 4Å: Chain A: K.97 Ligands: UNX.13, UNX.14 Ligand excluded by PLIP UNX.16: 10 residues within 4Å: Chain A: G.70, F.72, S.73, Q.74 Ligands: UNX.17, UNX.18, UNX.19, UNX.20, UNX.21, UNX.22 Ligand excluded by PLIP UNX.17: 4 residues within 4Å: Chain A: Q.74 Ligands: UNX.16, UNX.18, UNX.19 Ligand excluded by PLIP UNX.18: 6 residues within 4Å: Chain A: G.70, L.71 Ligands: UNX.16, UNX.17, UNX.19, UNX.22 Ligand excluded by PLIP UNX.19: 7 residues within 4Å: Chain A: G.70 Ligands: UNX.16, UNX.17, UNX.18, UNX.20, UNX.21, UNX.22 Ligand excluded by PLIP UNX.20: 9 residues within 4Å: Chain A: G.70, F.72, A.125, G.128, F.129 Ligands: UNX.16, UNX.19, UNX.21, UNX.22 Ligand excluded by PLIP UNX.21: 6 residues within 4Å: Chain A: S.73, A.125, H.126 Ligands: UNX.16, UNX.19, UNX.20 Ligand excluded by PLIP UNX.22: 8 residues within 4Å: Chain A: G.70, G.128, F.129, I.134 Ligands: UNX.16, UNX.18, UNX.19, UNX.20 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Qiu, C. et al., The PWWP domain of mammalian DNA methyltransferase Dnmt3b defines a new family of DNA-binding folds. Nat.Struct.Biol. (2002)

Release Date

2002-02-27

Peptides

DNA cytosine-5 methyltransferase 3B2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA cytosine-5 methyltransferase 3B2