SMTL ID : 1kht.2 (1 other biounit)

Adenylate kinase from Methanococcus voltae

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-hexamer

Ligands

4 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.1: 12 residues within 4Å: Chain B: F.39, G.40, M.43, R.56, M.59, R.60, Q.71, T.91, H.92, V.95, G.104, R.138 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:T.91, B:H.92, B:G.104 Water bridges: B:G.40, B:G.40, B:D.57, B:H.92, B:R.138, B:R.138 Salt bridges: B:R.56, B:H.92, B:R.138 AMP.2: 12 residues within 4Å: Chain C: F.39, G.40, M.43, R.56, M.59, R.60, Q.71, T.91, H.92, V.95, G.104, R.138 10 PLIP interactions: 10 interactions with chain C Hydrogen bonds: C:R.60, C:T.91, C:H.92, C:G.104 Water bridges: C:G.40, C:M.59, C:R.60 Salt bridges: C:R.56, C:H.92, C:R.138 AMP.3: 12 residues within 4Å: Chain E: F.39, G.40, M.43, R.56, M.59, R.60, Q.71, T.91, H.92, V.95, G.104, R.138 12 PLIP interactions: 12 interactions with chain E Hydrogen bonds: E:T.91, E:H.92, E:G.104 Water bridges: E:G.40, E:G.40, E:H.92, E:H.92, E:R.138, E:R.138 Salt bridges: E:R.56, E:H.92, E:R.138 AMP.4: 12 residues within 4Å: Chain F: F.39, G.40, M.43, R.56, M.59, R.60, Q.71, T.91, H.92, V.95, G.104, R.138 10 PLIP interactions: 10 interactions with chain F Hydrogen bonds: F:R.60, F:T.91, F:H.92, F:G.104 Water bridges: F:G.40, F:M.59, F:R.60 Salt bridges: F:R.56, F:H.92, F:R.138

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Criswell, A.R. et al., Structures of thermophilic and mesophilic adenylate kinases from the genus Methanococcus. J.Mol.Biol. (2003)

Release Date

2003-06-03

Peptides

adenylate kinase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

adenylate kinase

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