SMTL ID : 1kj1.2 (1 other biounit)

MANNOSE-SPECIFIC AGGLUTININ (LECTIN) FROM GARLIC (ALLIUM SATIVUM) BULBS COMPLEXED WITH ALPHA-D-MANNOSE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-1-1-mer

Ligands

7 x MAN: alpha-D-mannopyranose(Non-covalent)

MAN.1: 8 residues within 4Å: Chain A: Q.90, D.92, N.94, Y.98 Chain B: M.5, N.84, D.101, S.104 7 PLIP interactions: 2 interactions with chain B, 5 interactions with chain A Hydrogen bonds: B:D.101, B:S.104, A:Q.90, A:N.94, A:Y.98 Water bridges: A:D.92, A:D.92 MAN.2: 6 residues within 4Å: Chain A: Q.58, D.60, N.62, Y.66, S.72, A.75 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.58, A:D.60, A:N.62, A:Y.66, A:Y.66, A:S.72 MAN.3: 5 residues within 4Å: Chain A: Q.26, D.28, N.30, Y.34, S.39 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.26, A:D.28, A:N.30, A:Y.34, A:Y.34, A:S.39 MAN.4: 8 residues within 4Å: Chain A: Y.21, L.33, D.35, V.40, G.93 Chain B: T.107, Y.108, K.109 5 PLIP interactions: 1 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:K.109, A:Y.21, A:D.35, A:D.35 Water bridges: A:D.35 MAN.5: 9 residues within 4Å: Chain A: N.84, D.101, S.104, Y.108 Chain B: Q.90, D.92, N.94, V.96, Y.98 9 PLIP interactions: 4 interactions with chain A, 5 interactions with chain B Hydrogen bonds: A:D.101, B:Q.90, B:D.92, B:N.94, B:Y.98, B:Y.98 Water bridges: A:N.84, A:S.104, A:S.104 MAN.6: 7 residues within 4Å: Chain B: Q.58, D.60, N.62, Y.66, S.72, A.75, V.79 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:Q.58, B:D.60, B:N.62, B:Y.66, B:S.72 Water bridges: B:A.75 MAN.7: 6 residues within 4Å: Chain B: Q.26, D.28, N.30, Y.34, A.39, D.46 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:Q.26, B:N.30, B:Y.34, B:Y.34, B:D.46 Water bridges: B:D.28, B:D.28

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ramachandraiah, G. et al., Re-refinement using reprocessed data to improve the quality of the structure: a case study involving garlic lectin. Acta Crystallogr.,Sect.D (2002)

Release Date

2002-02-22

Peptides

lectin I: A
lectin II: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
P

B
Q

lectin I

lectin II

Related Entries With Identical Sequence