- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-dimer
- Ligands
- 5 x MG: MAGNESIUM ION(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
NA.4: 2 residues within 4Å:- Chain A: A.52
- Chain B: A.52
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:A.52
NA.5: 4 residues within 4Å:- Chain A: N.99, V.100, P.102, C.103
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:N.99, A:N.99, A:V.100
- Water bridges: A:Y.260, A:Y.260
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
ATP.8: 24 residues within 4Å:- Chain A: R.113, S.129, I.152, K.154, S.158, S.159, S.160, G.161, Q.164, E.194, G.195, V.196, V.197, F.199, E.202, Q.224, G.227, E.266, F.268, E.278
- Ligands: MG.1, MG.2, MG.3, EDO.12
23 PLIP interactions:23 interactions with chain A- Hydrogen bonds: A:S.129, A:K.154, A:S.158, A:S.160, A:G.161, A:Q.164, A:E.194, A:V.197, A:E.202, A:E.266
- Water bridges: A:R.113, A:R.113, A:R.113, A:R.113, A:Q.224, A:Q.224, A:D.228, A:Y.229, A:E.266, A:S.277
- Salt bridges: A:R.113, A:R.113, A:K.154
ATP.17: 19 residues within 4Å:- Chain B: R.113, S.129, K.154, S.158, S.159, S.160, G.161, Q.164, E.194, G.195, V.197, F.199, E.202, Q.224, E.266, F.268, E.278
- Ligands: MG.15, MG.16
26 PLIP interactions:26 interactions with chain B- Hydrogen bonds: B:S.129, B:K.154, B:S.158, B:S.160, B:G.161, B:Q.164, B:E.194, B:V.197, B:E.202
- Water bridges: B:E.83, B:R.113, B:R.113, B:R.113, B:Q.224, B:Q.224, B:Q.224, B:E.266, B:E.266, B:E.266, B:S.277, B:E.278, B:E.278, B:E.278
- Salt bridges: B:R.113, B:R.113, B:K.154
- 1 x MPO: 3[N-MORPHOLINO]PROPANE SULFONIC ACID(Non-covalent)
- 6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.10: 5 residues within 4Å:- Chain A: R.8, A.11, R.13, E.36, R.54
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.8, A:R.13, A:R.54
EDO.11: 6 residues within 4Å:- Chain A: I.147, G.148, Y.149, P.150, G.195, V.196
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:V.196, A:V.196
EDO.12: 8 residues within 4Å:- Chain A: E.83, E.266, E.278, V.279, S.280, H.284
- Ligands: MG.1, ATP.8
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:E.83, A:H.284
- Water bridges: A:S.280
EDO.13: 4 residues within 4Å:- Chain A: L.255, G.258, G.259, Y.260
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:L.255, A:G.259
- Water bridges: A:S.209, A:S.209, A:A.210, A:Y.260, A:Y.260
EDO.14: 1 residues within 4Å:- Chain A: P.9
2 PLIP interactions:2 interactions with chain B- Water bridges: B:N.333, B:N.333
EDO.18: 3 residues within 4Å:- Chain B: S.239, P.240, L.241
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:L.241
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Thoden, J.B. et al., PurT-encoded glycinamide ribonucleotide transformylase. Accommodation of adenosine nucleotide analogs within the active site. J.Biol.Chem. (2002)
- Release Date
- 2002-06-28
- Peptides
- phosphoribosylglycinamide formyltransferase 2: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-dimer
- Ligands
- 5 x MG: MAGNESIUM ION(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 1 x MPO: 3[N-MORPHOLINO]PROPANE SULFONIC ACID(Non-covalent)
- 6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Thoden, J.B. et al., PurT-encoded glycinamide ribonucleotide transformylase. Accommodation of adenosine nucleotide analogs within the active site. J.Biol.Chem. (2002)
- Release Date
- 2002-06-28
- Peptides
- phosphoribosylglycinamide formyltransferase 2: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B