SMTL ID : 1kmb.1

SELECTIN-LIKE MUTANT OF MANNOSE-BINDING PROTEIN A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-trimer

Ligands

9 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: D.89, E.93, D.116, E.121, D.122 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.89, A:E.93, A:D.116, A:D.122, H2O.6 CA.2: 5 residues within 4Å: Chain A: E.113, N.115, E.121, N.133, D.134 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.113, A:E.121, A:D.134, A:D.134, H2O.6 CA.3: 2 residues within 4Å: Chain A: E.93, D.122 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.93, A:D.122, H2O.6, H2O.6, H2O.6 CA.5: 6 residues within 4Å: Chain B: D.89, E.93, D.116, E.121, D.122 Ligands: CA.7 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.89, B:E.93, B:E.93, B:D.116, B:D.122 CA.6: 5 residues within 4Å: Chain B: E.113, N.115, E.121, N.133, D.134 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.113, B:E.121, B:D.134, B:D.134, H2O.9 CA.7: 4 residues within 4Å: Chain B: D.89, E.93, D.122 Ligands: CA.5 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.93, B:D.122, H2O.9 CA.9: 6 residues within 4Å: Chain C: D.89, E.93, D.116, E.121, D.122 Ligands: CA.11 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.89, C:E.93, C:D.116, C:D.122, H2O.15 CA.10: 5 residues within 4Å: Chain C: E.113, N.115, E.121, N.133, D.134 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:E.113, C:E.121, C:D.134, C:D.134, H2O.15 CA.11: 3 residues within 4Å: Chain C: E.93, D.122 Ligands: CA.9 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:E.93, C:D.122, C:D.122, H2O.17

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 3 residues within 4Å: Chain A: D.122, S.136, C.137 Ligand excluded by PLIP CL.8: 4 residues within 4Å: Chain B: E.121, D.122, S.136, C.137 Ligand excluded by PLIP CL.12: 3 residues within 4Å: Chain C: D.122, S.136, C.137 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ng, K.K. et al., Structure of a selectin-like mutant of mannose-binding protein complexed with sialylated and sulfated Lewis(x) oligosaccharides. Biochemistry (1997)

Release Date

1997-02-12

Peptides

MANNOSE-BINDING PROTEIN-A: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
1

B
2

C
3

MANNOSE-BINDING PROTEIN-A

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