- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)
- 2 x LYS: LYSINE(Non-covalent)
LYS.2: 12 residues within 4Å:- Chain A: K.54, H.191, R.271, R.307, Y.311, Y.378, M.382
- Chain B: C.342, E.343, Y.386
- Ligands: PLP.1, DLY.3
9 PLIP interactions:6 interactions with chain A, 1 interactions with chain B, 2 Ligand-Ligand interactions- Hydrophobic interactions: A:Y.378, A:Y.378
- Hydrogen bonds: A:H.191, A:Y.311, B:E.343, K.2, K.2
- Salt bridges: A:R.271, A:R.307
LYS.5: 12 residues within 4Å:- Chain A: C.342, E.343, Y.386
- Chain B: K.54, H.191, R.271, R.307, Y.311, Y.378, M.382
- Ligands: PLP.4, DLY.6
8 PLIP interactions:5 interactions with chain B, 2 Ligand-Ligand interactions, 1 interactions with chain A- Hydrophobic interactions: B:Y.378, B:Y.378
- Hydrogen bonds: B:H.191, K.5, K.5, A:E.343
- Salt bridges: B:R.271, B:R.307
- 2 x DLY: D-LYSINE(Non-covalent)
DLY.3: 12 residues within 4Å:- Chain A: K.54, T.157, H.191, Y.311, Y.378, M.382
- Chain B: C.342, E.343, S.344, Y.386
- Ligands: PLP.1, LYS.2
9 PLIP interactions:5 interactions with chain A, 3 Ligand-Ligand interactions, 1 interactions with chain B- Hydrophobic interactions: A:Y.378, K.2, K.2
- Hydrogen bonds: A:H.191, A:Y.311, A:Y.311, B:S.344
- Salt bridges: A:H.191, K.2
DLY.6: 12 residues within 4Å:- Chain A: C.342, E.343, S.344, Y.386
- Chain B: K.54, T.157, H.191, Y.311, Y.378, M.382
- Ligands: PLP.4, LYS.5
8 PLIP interactions:1 interactions with chain A, 4 interactions with chain B, 3 Ligand-Ligand interactions- Hydrogen bonds: A:S.344, B:H.191, B:Y.311
- Hydrophobic interactions: B:Y.378, K.5, K.5
- Salt bridges: B:H.191, K.5
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Levdikov, V. et al., Diaminopimelate Decarboxylase uses a Versatile Active Site for Stereospecific Decarboxylation. To be Published
- Release Date
- 2003-11-11
- Peptides
- Diaminopimelate decarboxylase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)
- 2 x LYS: LYSINE(Non-covalent)
- 2 x DLY: D-LYSINE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Levdikov, V. et al., Diaminopimelate Decarboxylase uses a Versatile Active Site for Stereospecific Decarboxylation. To be Published
- Release Date
- 2003-11-11
- Peptides
- Diaminopimelate decarboxylase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A