SMTL ID : 1ko3.1

VIM-2, a Zn-beta-lactamase from Pseudomonas aeruginosa with Cys221 reduced

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.91 Å

Oligo State

monomer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.83, H.85, H.148 Ligands: OH.7 5 PLIP interactions: 3 interactions with chain A, 1 Ligand-Ligand interactions, 1 Ligand-Water interactions Metal complexes: A:H.83, A:H.85, A:H.148, OH.7, H2O.107 ZN.2: 6 residues within 4Å: Chain A: D.87, R.88, C.167, H.209 Ligands: CL.6, OH.7 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:D.87, A:C.167, A:H.209, OH.7 ZN.3: 3 residues within 4Å: Chain A: H.122 Ligands: ACT.4, ACT.5 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:H.122, ACT.5

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.4: 8 residues within 4Å: Chain A: R.96, V.100, A.101, T.102, T.121, H.122 Ligands: ZN.3, ACT.5 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:R.96, A:T.121 Hydrogen bonds: A:T.102, A:T.121 Salt bridges: A:H.122 ACT.5: 4 residues within 4Å: Chain A: A.101, H.122 Ligands: ZN.3, ACT.4 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:H.122

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 3 residues within 4Å: Chain A: H.209 Ligands: ZN.2, OH.7 Ligand excluded by PLIP

1 x OH: HYDROXIDE ION(Non-covalent)

OH.7: 8 residues within 4Å: Chain A: H.83, H.85, D.87, H.148, C.167 Ligands: ZN.1, ZN.2, CL.6 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.87

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Garcia-Saez, I. et al., The three-dimensional structure of VIM-2, a Zn-beta-lactamase from Pseudomonas aeruginosa in its reduced and oxidised form. J.Mol.Biol. (2008)

Release Date

2003-09-02

Peptides

VIM-2 metallo-beta-lactamase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

VIM-2 metallo-beta-lactamase

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