- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.65 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x ZN: ZINC ION(Non-covalent)
- 4 x SO4: SULFATE ION(Non-functional Binders)
SO4.5: 3 residues within 4Å:- Chain A: P.241, L.242, H.269
8 PLIP interactions:8 interactions with chain A- Hydrogen bonds: A:L.242
- Water bridges: A:L.238, A:D.239, A:T.240, A:H.243, A:H.269, A:G.270
- Salt bridges: A:H.269
SO4.6: 3 residues within 4Å:- Chain B: P.241, L.242, H.269
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:L.242
- Water bridges: B:H.243, B:H.269, B:G.270, B:Q.288, B:Q.288
- Salt bridges: B:H.269
SO4.13: 3 residues within 4Å:- Chain C: P.241, L.242, H.269
7 PLIP interactions:7 interactions with chain C- Hydrogen bonds: C:L.242
- Water bridges: C:L.238, C:D.239, C:T.240, C:H.269, C:G.270
- Salt bridges: C:H.269
SO4.14: 3 residues within 4Å:- Chain D: P.241, L.242, H.269
6 PLIP interactions:6 interactions with chain D- Hydrogen bonds: D:L.242
- Water bridges: D:H.243, D:G.270, D:Q.288, D:Q.288
- Salt bridges: D:H.269
- 4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
NAD.7: 32 residues within 4Å:- Chain A: C.46, G.47, S.48, Q.50, H.51, F.93, D.169, T.173, G.193, G.195, P.196, V.197, G.216, D.217, L.218, R.222, L.236, A.261, V.262, A.266, R.267, H.269, V.282, P.299, G.300, L.301, G.336, Q.337, T.338, F.379
- Chain C: W.327
- Ligands: ZN.1
25 PLIP interactions:25 interactions with chain A- Hydrophobic interactions: A:T.173, A:V.197
- Hydrogen bonds: A:G.47, A:H.51, A:G.195, A:G.195, A:V.197, A:R.222, A:R.222, A:V.262, A:R.267, A:H.269, A:P.299, A:L.301, A:T.338
- Water bridges: A:Q.50, A:Q.50, A:Q.50, A:Q.50, A:Q.50, A:Q.50, A:G.198, A:N.219, A:R.267
- Salt bridges: A:R.222
NAD.8: 33 residues within 4Å:- Chain B: C.46, G.47, S.48, Q.50, H.51, F.93, D.169, T.173, G.193, G.195, P.196, V.197, G.216, D.217, L.218, R.222, L.236, A.261, V.262, A.266, R.267, H.269, T.281, V.282, P.299, G.300, L.301, G.336, Q.337, T.338, F.379
- Chain D: W.327
- Ligands: ZN.3
21 PLIP interactions:21 interactions with chain B- Hydrophobic interactions: B:T.173, B:V.197
- Hydrogen bonds: B:G.47, B:Q.50, B:H.51, B:G.195, B:G.195, B:V.197, B:R.222, B:R.222, B:V.262, B:R.267, B:H.269, B:P.299, B:L.301, B:T.338
- Water bridges: B:Q.50, B:G.198, B:R.222, B:Q.337
- Salt bridges: B:R.222
NAD.15: 32 residues within 4Å:- Chain A: W.327
- Chain C: C.46, G.47, S.48, Q.50, H.51, F.93, D.169, T.173, G.193, G.195, P.196, V.197, G.216, D.217, L.218, R.222, L.236, A.261, V.262, A.266, R.267, H.269, V.282, P.299, G.300, L.301, G.336, Q.337, T.338, F.379
- Ligands: ZN.9
24 PLIP interactions:24 interactions with chain C- Hydrophobic interactions: C:T.173, C:V.197
- Hydrogen bonds: C:G.47, C:Q.50, C:H.51, C:G.195, C:G.195, C:V.197, C:R.222, C:R.222, C:V.262, C:R.267, C:H.269, C:P.299, C:L.301, C:T.338, C:T.338
- Water bridges: C:Q.50, C:G.198, C:N.219, C:R.222, C:R.267, C:Q.337
- Salt bridges: C:R.222
NAD.16: 33 residues within 4Å:- Chain B: W.327
- Chain D: C.46, G.47, S.48, Q.50, H.51, F.93, D.169, T.173, G.193, G.195, P.196, V.197, G.216, D.217, L.218, R.222, L.236, A.261, V.262, A.266, R.267, H.269, T.281, V.282, P.299, G.300, L.301, G.336, Q.337, T.338, F.379
- Ligands: ZN.11
22 PLIP interactions:22 interactions with chain D- Hydrophobic interactions: D:T.173, D:V.197
- Hydrogen bonds: D:G.47, D:Q.50, D:H.51, D:G.195, D:G.195, D:V.197, D:R.222, D:R.222, D:V.262, D:R.267, D:H.269, D:P.299, D:L.301, D:T.338, D:T.338
- Water bridges: D:Q.50, D:G.198, D:R.222, D:Q.337
- Salt bridges: D:R.222
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tanaka, N. et al., Crystal Structure of Formaldehyde Dehydrogenase from Pseudomonas putida: the Structural Origin of the Tightly Bound Cofactor in Nicotinoprotein Dehydrogenases. J.mol.biol. (2002)
- Release Date
- 2002-12-11
- Peptides
- formaldehyde dehydrogenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.65 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x ZN: ZINC ION(Non-covalent)
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tanaka, N. et al., Crystal Structure of Formaldehyde Dehydrogenase from Pseudomonas putida: the Structural Origin of the Tightly Bound Cofactor in Nicotinoprotein Dehydrogenases. J.mol.biol. (2002)
- Release Date
- 2002-12-11
- Peptides
- formaldehyde dehydrogenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B