SMTL ID : 1kq0.1

Human methionine aminopeptidase type II in complex with D-methionine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: F.219, D.251, D.262, E.459 Ligands: ZN.2, MED.3 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.251, A:D.251, A:D.262, A:D.262, A:E.459 ZN.2: 7 residues within 4Å: Chain A: D.262, H.331, A.362, E.364, E.459 Ligands: ZN.1, MED.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.262, A:E.364, A:E.459

1 x MED: D-METHIONINE(Non-covalent)

MED.3: 9 residues within 4Å: Chain A: F.219, H.231, D.251, D.262, H.331, H.339, H.382 Ligands: ZN.1, ZN.2 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.219 Hydrogen bonds: A:D.262 Water bridges: A:Q.457, A:Q.457 Salt bridges: A:H.231, A:H.331, A:H.339

1 x TBU: TERTIARY-BUTYL ALCOHOL(Non-functional Binders)

TBU.4: 5 residues within 4Å: Chain A: M.184, F.265, K.281, F.458, D.477 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.265, A:F.458

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nonato, M.C. et al., Human methionine aminopeptidase type 2 in complex with L- and D-methionine. Bioorg.Med.Chem.Lett. (2006)

Release Date

2003-12-09

Peptides

Methionine aminopeptidase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Methionine aminopeptidase 2

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