SMTL ID : 1kqo.1

Crystal structure of NMN/NaMN adenylyltransferase complexed with deamido-NAD

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-hexamer

Ligands

6 x DND: NICOTINIC ACID ADENINE DINUCLEOTIDE(Non-covalent)

DND.1: 25 residues within 4Å: Chain A: C.14, G.15, S.16, F.17, M.23, H.24, L.27, V.51, Y.55, K.57, W.92, E.94, T.95, L.96, L.154, C.155, G.156, D.158, L.159, L.168, W.169, V.186, E.215, N.219, P.269 29 PLIP interactions: 29 interactions with chain A Hydrophobic interactions: A:L.168, A:W.169, A:P.269 Hydrogen bonds: A:C.14, A:S.16, A:F.17, A:H.24, A:W.92, A:T.95, A:T.95, A:L.96, A:L.154, A:G.156, A:L.159, A:L.168, A:N.219 Water bridges: A:G.15, A:Y.55, A:Y.55, A:K.57, A:K.57, A:D.158, A:K.170, A:K.170 Salt bridges: A:H.24, A:K.57, A:K.57 pi-Stacking: A:W.92, A:W.169 DND.2: 23 residues within 4Å: Chain B: C.14, G.15, S.16, F.17, M.23, H.24, L.27, V.51, Y.55, K.57, W.92, E.94, T.95, L.154, C.155, G.156, D.158, L.159, L.168, W.169, V.186, E.215, P.269 29 PLIP interactions: 29 interactions with chain B Hydrophobic interactions: B:L.168, B:W.169, B:P.269, B:P.269 Hydrogen bonds: B:C.14, B:S.16, B:F.17, B:W.92, B:T.95, B:T.95, B:L.154, B:G.156, B:L.159, B:L.168, B:N.219 Water bridges: B:G.15, B:D.158, B:D.158, B:D.158, B:K.170, B:D.173, B:D.173, B:S.223, B:S.223 Salt bridges: B:H.24, B:K.57, B:K.57 pi-Stacking: B:W.92, B:W.169 DND.3: 24 residues within 4Å: Chain C: C.14, G.15, S.16, F.17, M.23, H.24, L.27, V.51, Y.55, K.57, W.92, E.94, T.95, L.154, C.155, G.156, D.158, L.159, L.168, W.169, V.186, E.215, N.219, P.269 27 PLIP interactions: 27 interactions with chain C Hydrophobic interactions: C:L.168, C:W.169, C:P.269 Hydrogen bonds: C:C.14, C:S.16, C:F.17, C:T.95, C:L.154, C:G.156, C:L.159, C:L.168, C:N.219 Water bridges: C:G.15, C:S.16, C:S.16, C:N.18, C:K.57, C:D.158, C:K.170, C:D.173, C:D.173, C:D.173 Salt bridges: C:H.24, C:K.57, C:K.57 pi-Stacking: C:W.92, C:W.169 DND.4: 23 residues within 4Å: Chain D: C.14, G.15, S.16, F.17, M.23, H.24, L.27, V.51, Y.55, K.57, W.92, E.94, T.95, L.154, C.155, G.156, D.158, L.159, L.168, W.169, V.186, E.215, D.220 29 PLIP interactions: 29 interactions with chain D Hydrophobic interactions: D:L.168, D:W.169 Hydrogen bonds: D:C.14, D:C.14, D:S.16, D:F.17, D:W.92, D:T.95, D:T.95, D:L.96, D:G.156, D:L.159, D:L.168, D:D.220, D:D.220 Water bridges: D:G.15, D:N.18, D:D.158, D:D.158, D:D.158, D:D.158, D:K.170, D:D.173, D:D.173 Salt bridges: D:H.24, D:K.57, D:K.57 pi-Stacking: D:W.92, D:W.169 DND.5: 22 residues within 4Å: Chain E: C.14, G.15, S.16, F.17, M.23, H.24, L.27, V.51, Y.55, K.57, W.92, E.94, T.95, C.155, G.156, D.158, L.159, L.168, W.169, V.186, E.215, D.220 27 PLIP interactions: 27 interactions with chain E Hydrophobic interactions: E:W.92, E:L.168, E:W.169 Hydrogen bonds: E:C.14, E:S.16, E:F.17, E:W.92, E:T.95, E:T.95, E:L.96, E:G.156, E:L.159, E:L.168 Water bridges: E:G.15, E:D.158, E:D.158, E:K.170, E:D.173, E:D.173, E:D.173, E:D.173, E:E.215, E:N.219 Salt bridges: E:H.24, E:K.57, E:K.57 pi-Stacking: E:W.169 DND.6: 22 residues within 4Å: Chain F: C.14, G.15, S.16, F.17, M.23, H.24, L.27, V.51, Y.55, K.57, W.92, E.94, T.95, C.155, G.156, D.158, L.159, L.168, W.169, V.186, E.215, P.269 26 PLIP interactions: 26 interactions with chain F Hydrophobic interactions: F:W.92, F:L.168, F:L.168, F:W.169, F:P.269 Hydrogen bonds: F:C.14, F:S.16, F:F.17, F:H.24, F:W.92, F:T.95, F:T.95, F:L.154, F:G.156, F:D.158, F:L.159, F:L.168 Water bridges: F:N.18, F:H.24, F:L.96, F:D.158, F:K.170 Salt bridges: F:H.24, F:K.57, F:K.57 pi-Stacking: F:W.169

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, T. et al., Structure of Hhuman of Nicotinamide/Nicotinic Acid Mononucleotide Adenylyltransferase.Basis for the dual substrate specificity and activation of the oncolytic agent tiazofurin. J.Biol.Chem. (2002)

Release Date

2003-01-07

Peptides

NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE

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