SMTL ID : 1kr2.1

CRYSTAL STRUCTURE OF HUMAN NMN/NAMN ADENYLYL TRANSFERASE COMPLEXED WITH TIAZOFURIN ADENINE DINUCLEOTIDE (TAD)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-hexamer

Ligands

6 x TAD: BETA-METHYLENE-THIAZOLE-4-CARBOXYAMIDE-ADENINE DINUCLEOTIDE(Non-covalent)

TAD.1: 22 residues within 4Å: Chain A: C.14, G.15, S.16, F.17, M.23, H.24, L.27, V.51, Y.55, K.57, W.92, E.94, T.95, C.155, G.156, L.159, L.168, W.169, V.186, N.219, D.220, P.269 24 PLIP interactions: 24 interactions with chain A Hydrogen bonds: A:G.15, A:S.16, A:F.17, A:H.24, A:K.57, A:T.95, A:T.95, A:T.95, A:G.156, A:L.159, A:N.219, A:D.220 Water bridges: A:C.14, A:G.15, A:N.18, A:Y.55, A:K.57, A:L.96, A:L.154, A:A.157, A:K.170, A:S.223 pi-Stacking: A:W.92, A:W.169 TAD.2: 22 residues within 4Å: Chain B: C.14, G.15, S.16, F.17, M.23, H.24, L.27, V.51, Y.55, K.57, E.86, W.92, E.94, T.95, L.154, C.155, G.156, L.159, L.168, W.169, V.186, D.220 21 PLIP interactions: 21 interactions with chain B Hydrogen bonds: B:G.15, B:S.16, B:F.17, B:H.24, B:K.57, B:K.57, B:W.92, B:T.95, B:T.95, B:L.154, B:G.156, B:L.159, B:D.220 Water bridges: B:G.15, B:D.158, B:K.170, B:D.173, B:R.188, B:S.223, B:N.273 pi-Stacking: B:W.169 TAD.3: 20 residues within 4Å: Chain C: C.14, G.15, S.16, F.17, M.23, H.24, L.27, V.51, Y.55, K.57, W.92, E.94, T.95, C.155, G.156, L.159, L.168, W.169, N.219, I.221 25 PLIP interactions: 25 interactions with chain C Hydrogen bonds: C:G.15, C:S.16, C:F.17, C:K.57, C:K.57, C:W.92, C:T.95, C:T.95, C:G.156, C:L.159, C:N.219, C:N.219, C:I.221, C:S.223, C:S.223 Water bridges: C:C.14, C:G.15, C:N.18, C:S.162, C:K.170, C:D.173, C:S.223, C:N.273 pi-Stacking: C:W.92, C:W.169 TAD.4: 21 residues within 4Å: Chain D: C.14, G.15, S.16, F.17, M.23, H.24, L.27, V.51, Y.55, K.57, W.92, E.94, T.95, C.155, G.156, D.158, L.159, L.168, W.169, V.186, D.220 30 PLIP interactions: 30 interactions with chain D Hydrogen bonds: D:G.15, D:S.16, D:F.17, D:K.57, D:T.95, D:T.95, D:T.95, D:G.156, D:L.159, D:D.220, D:D.220 Water bridges: D:C.14, D:C.14, D:G.15, D:H.24, D:K.57, D:K.57, D:L.154, D:L.154, D:A.157, D:A.157, D:A.157, D:D.173, D:D.173, D:D.173, D:S.223, D:S.223, D:N.273 pi-Stacking: D:W.92, D:W.169 TAD.5: 21 residues within 4Å: Chain E: C.14, G.15, S.16, F.17, M.23, H.24, L.27, V.51, Y.55, K.57, W.92, E.94, T.95, L.154, C.155, G.156, L.159, L.168, W.169, V.186, D.220 23 PLIP interactions: 23 interactions with chain E Hydrogen bonds: E:C.14, E:G.15, E:S.16, E:F.17, E:H.24, E:K.57, E:W.92, E:T.95, E:T.95, E:T.95, E:G.156, E:L.159, E:D.220 Water bridges: E:G.15, E:L.96, E:D.158, E:D.173, E:D.173, E:D.173, E:S.223, E:N.273 pi-Stacking: E:W.92, E:W.169 TAD.6: 20 residues within 4Å: Chain F: C.14, G.15, S.16, F.17, M.23, H.24, L.27, V.51, Y.55, K.57, W.92, E.94, T.95, C.155, G.156, L.159, L.168, W.169, V.186, D.220 20 PLIP interactions: 20 interactions with chain F Hydrogen bonds: F:G.15, F:S.16, F:F.17, F:H.24, F:K.57, F:T.95, F:T.95, F:T.95, F:G.156, F:L.159 Water bridges: F:G.15, F:N.18, F:Y.55, F:K.57, F:K.57, F:D.158, F:D.158, F:N.219, F:N.273 pi-Stacking: F:W.169

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, T. et al., Structure of Hhuman of Nicotinamide/Nicotinic Acid Mononucleotide Adenylyltransferase.Basis for the dual substrate specificity and activation of the oncolytic agent tiazofurin. J.Biol.Chem. (2002)

Release Date

2003-01-08

Peptides

NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

NICOTINAMIDE MONONUCLEOTIDE ADENYLYL TRANSFERASE

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