SMTL ID : 1ksi.1

CRYSTAL STRUCTURE OF A EUKARYOTIC (PEA SEEDLING) COPPER-CONTAINING AMINE OXIDASE AT 2.2A RESOLUTION

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: N.126, S.128, E.129 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 3 residues within 4Å: Chain B: N.126, S.128, E.129 No protein-ligand interaction detected (PLIP)

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)

NAG.3: 4 residues within 4Å: Chain A: N.553, T.555, E.556, Q.579 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.555, A:Q.579, A:Q.579 Water bridges: A:R.554 NAG.6: 4 residues within 4Å: Chain B: N.553, T.555, E.556, Q.579 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:N.553, B:T.555, B:E.556, B:Q.579, B:Q.579

2 x CU: COPPER (II) ION(Non-covalent)

CU.4: 3 residues within 4Å: Chain A: H.437, H.439, H.598 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.437, A:H.439, A:H.598, H2O.1, H2O.1 CU.7: 3 residues within 4Å: Chain B: H.437, H.439, H.598 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.437, B:H.439, B:H.598, H2O.11, H2O.11

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.5: 6 residues within 4Å: Chain A: K.43, D.446, F.447, D.448, D.587, I.588 6 PLIP interactions: 5 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.446, A:F.447, A:D.448, A:D.587, A:I.588, H2O.1 MN.8: 6 residues within 4Å: Chain B: K.43, D.446, F.447, D.448, D.587, I.588 6 PLIP interactions: 5 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.446, B:F.447, B:D.448, B:D.587, B:I.588, H2O.11

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kumar, V. et al., Crystal structure of a eukaryotic (pea seedling) copper-containing amine oxidase at 2.2 A resolution. Structure (1996)

Release Date

1997-12-24

Peptides

COPPER AMINE OXIDASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

COPPER AMINE OXIDASE