SMTL ID : 1kv9.1

Structure at 1.9 A Resolution of a Quinohemoprotein Alcohol Dehydrogenase from Pseudomonas putida HK5

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: E.173, N.250, D.295 Ligands: PQQ.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.173, A:E.173, A:D.295

1 x PQQ: PYRROLOQUINOLINE QUINONE(Non-covalent)

PQQ.2: 23 residues within 4Å: Chain A: E.59, C.105, C.106, V.109, R.111, T.155, G.170, G.171, A.172, E.173, T.230, W.232, N.250, D.295, K.322, P.377, N.382, W.383, W.460, G.524, V.525 Ligands: CA.1, ACN.5 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:W.232, A:V.525 Hydrogen bonds: A:R.111, A:G.171, A:A.172, A:E.173, A:N.250, A:K.322, A:N.382, A:V.525 Water bridges: A:T.230, A:T.230 Salt bridges: A:R.111, A:R.111 pi-Stacking: A:W.232, A:W.232, A:W.232

1 x HEC: HEME C(Covalent)

HEC.3: 21 residues within 4Å: Chain A: A.101, R.102, F.590, C.591, V.593, C.594, H.595, I.605, P.606, L.608, S.611, T.615, F.619, I.622, V.623, L.628, L.631, M.633, P.634, F.636, L.640 23 PLIP interactions: 23 interactions with chain A, Hydrophobic interactions: A:F.590, A:V.593, A:I.605, A:P.606, A:P.606, A:L.608, A:L.608, A:T.615, A:F.619, A:F.619, A:I.622, A:V.623, A:L.628, A:L.631, A:F.636, A:L.640 Hydrogen bonds: A:S.611 Water bridges: A:S.612, A:T.615 pi-Stacking: A:H.595, A:H.595, A:H.595 Metal complexes: A:H.595

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.4: 7 residues within 4Å: Chain A: W.48, Y.49, A.83, A.84, S.85, G.86, Y.515 2 PLIP interactions: 2 interactions with chain A Water bridges: A:Y.49, A:Y.49

1 x ACN: ACETONE(Non-covalent)

ACN.5: 7 residues within 4Å: Chain A: E.173, D.295, K.322, P.377, F.378, F.425 Ligands: PQQ.2 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:E.173, A:F.378, A:F.425 Hydrogen bonds: A:K.322

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 4 residues within 4Å: Chain A: D.51, L.52, R.542, S.543 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:L.52, A:L.52 Water bridges: A:N.54, A:N.541, A:R.542, A:S.543

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, Z.W. et al., Structure at 1.9 A resolution of a quinohemoprotein alcohol dehydrogenase from Pseudomonas putida HK5. Structure (2002)

Release Date

2002-07-10

Peptides

TYPE II QUINOHEMOPROTEIN ALCOHOL DEHYDROGENASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

TYPE II QUINOHEMOPROTEIN ALCOHOL DEHYDROGENASE