SMTL ID : 1kvk.1

The Structure of Binary complex between a Mammalian Mevalonate Kinase and ATP: Insights into the Reaction Mechanism and Human Inherited Disease

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 7 residues within 4Å: Chain A: G.144, S.146, A.147, E.193, H.197, D.204 Ligands: ATP.2 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:S.146, A:E.193 MG.3: 7 residues within 4Å: Chain B: G.144, S.146, A.147, E.193, H.197, D.204 Ligands: ATP.4 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:S.146, B:E.193

2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.2: 19 residues within 4Å: Chain A: K.13, L.53, N.55, N.104, E.105, S.108, S.135, P.139, G.140, G.142, L.143, G.144, S.145, S.146, Y.149, I.196, H.197, D.204 Ligands: MG.1 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:N.104, A:S.108, A:S.135, A:G.140, A:G.142, A:G.144, A:S.145, A:S.145, A:S.146, A:D.204 Water bridges: A:A.141, A:L.143, A:H.197 Salt bridges: A:K.13, A:H.197, A:H.197 ATP.4: 19 residues within 4Å: Chain B: K.13, L.53, N.55, N.104, E.105, S.108, S.135, P.139, G.140, G.142, L.143, G.144, S.145, S.146, Y.149, I.196, H.197, D.204 Ligands: MG.3 16 PLIP interactions: 16 interactions with chain B Hydrogen bonds: B:N.104, B:S.108, B:S.135, B:G.140, B:G.142, B:G.144, B:S.145, B:S.145, B:S.146, B:D.204 Water bridges: B:A.141, B:L.143, B:H.197 Salt bridges: B:K.13, B:H.197, B:H.197

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fu, Z. et al., The Structure of a Binary complex between a Mammalian Mevalonate Kinase and ATP: Insights into the Reaction Mechanism and Human Inherited Disease. J.Biol.Chem. (2002)

Release Date

2002-03-27

Peptides

mevalonate kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

mevalonate kinase

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