SMTL ID : 1kws.1

CRYSTAL STRUCTURE OF BETA1,3-GLUCURONYLTRANSFERASE I IN COMPLEX WITH THE ACTIVE UDP-GLCUA DONOR

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 3 residues within 4Å: Chain A: D.122, N.123 Ligands: UGA.2 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.122, A:D.122, H2O.1, H2O.1 MN.3: 4 residues within 4Å: Chain B: D.122, N.123, R.236 Ligands: UGA.4 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.122, B:D.122, H2O.8, H2O.8

2 x UGA: URIDINE-5'-DIPHOSPHATE-GLUCURONIC ACID(Non-covalent)

UGA.2: 18 residues within 4Å: Chain A: P.8, T.9, Y.10, R.12, D.39, P.81, R.82, G.83, R.87, D.120, D.121, D.122, D.178, M.179, L.206, H.234, R.236 Ligands: MN.1 34 PLIP interactions: 34 interactions with chain A Hydrophobic interactions: A:R.82 Hydrogen bonds: A:Y.10, A:R.12, A:R.12, A:D.39, A:D.39, A:R.82, A:R.87, A:R.87, A:D.120, A:D.120, A:D.120, A:D.121, A:D.121, A:D.178, A:E.207 Water bridges: A:Y.10, A:T.65, A:T.65, A:R.82, A:R.82, A:R.82, A:G.83, A:N.123, A:A.180, A:A.180, A:R.236 Salt bridges: A:R.82, A:R.82, A:H.234, A:H.234, A:R.236, A:R.236 pi-Stacking: A:Y.10 UGA.4: 18 residues within 4Å: Chain B: P.8, T.9, Y.10, R.12, D.39, P.81, R.82, G.83, R.87, D.120, D.121, D.122, D.178, M.179, L.206, H.234, R.236 Ligands: MN.3 30 PLIP interactions: 30 interactions with chain B Hydrophobic interactions: B:R.82 Hydrogen bonds: B:R.12, B:D.39, B:R.82, B:R.87, B:R.87, B:D.120, B:D.120, B:D.120, B:D.121, B:D.121, B:H.234 Water bridges: B:R.12, B:R.82, B:R.82, B:G.83, B:Q.86, B:N.123, B:A.180, B:A.180, B:R.236, B:R.236 Salt bridges: B:R.82, B:R.82, B:R.82, B:H.234, B:H.234, B:R.236, B:R.236 pi-Stacking: B:Y.10

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pedersen, L.C. et al., Crystal structure of beta 1,3-glucuronyltransferase I in complex with active donor substrate UDP-GlcUA. J.Biol.Chem. (2002)

Release Date

2002-06-19

Peptides

BETA-1,3-GLUCURONYLTRANSFERASE 3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

BETA-1,3-GLUCURONYLTRANSFERASE 3

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