SMTL ID : 1ky2.1

GPPNHP-BOUND YPT7P AT 1.6 A RESOLUTION

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: T.22, T.40 Ligands: GNP.2 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.22, A:T.40, H2O.1, H2O.1

1 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)

GNP.2: 21 residues within 4Å: Chain A: D.16, S.17, G.18, V.19, G.20, K.21, T.22, S.23, Y.33, Q.35, A.39, T.40, T.65, G.67, N.126, K.127, D.129, S.158, A.159, K.160 Ligands: MG.1 28 PLIP interactions: 28 interactions with chain A Hydrogen bonds: A:S.17, A:G.18, A:V.19, A:G.20, A:K.21, A:K.21, A:T.22, A:S.23, A:S.23, A:Q.35, A:T.40, A:T.40, A:T.65, A:G.67, A:N.126, A:K.127, A:K.127, A:A.159, A:K.160 Water bridges: A:T.22, A:T.22, A:Y.33, A:Y.33, A:Q.68, A:Q.68, A:Q.68 Salt bridges: A:D.129 pi-Stacking: A:Y.33

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Constantinescu, A.T. et al., Rab-subfamily-specific regions of Ypt7p are structurally different from other RabGTPases. Structure (2002)

Release Date

2002-06-05

Peptides

GTP-BINDING PROTEIN YPT7P: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

GTP-BINDING PROTEIN YPT7P

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