SMTL ID : 1ky8.1

Crystal Structure of the Non-phosphorylating glyceraldehyde-3-phosphate Dehydrogenase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-tetramer

Ligands

4 x NA: SODIUM ION(Non-functional Binders)

NA.1: 3 residues within 4Å: Chain A: G.255, G.256 Chain C: E.249 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:E.249 NA.3: 3 residues within 4Å: Chain B: G.255, G.256 Chain D: E.249 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:E.249 NA.5: 3 residues within 4Å: Chain A: E.249 Chain C: G.255, G.256 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:E.249, C:D.234 Water bridges: A:E.249 NA.7: 3 residues within 4Å: Chain B: E.249 Chain D: G.255, G.256 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain B Hydrogen bonds: D:D.234, D:D.234 Water bridges: B:E.249

4 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.2: 32 residues within 4Å: Chain A: I.164, T.165, P.166, F.167, N.168, K.191, P.192, S.193, I.194, L.222, P.223, G.224, K.225, A.227, E.228, F.241, T.242, G.243, S.244, V.247, R.250, V.251, E.263, L.264, G.265, G.266, C.297, E.395, F.397, L.423, H.455, F.462 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:T.242 Hydrogen bonds: A:T.165, A:F.167, A:I.194, A:G.224, A:E.228, A:S.244, A:E.263, A:G.265, A:G.266, A:E.395, A:H.455 Water bridges: A:S.244, A:S.244, A:T.245, A:E.395, A:E.395 Salt bridges: A:K.191 NAP.4: 32 residues within 4Å: Chain B: I.164, T.165, P.166, F.167, N.168, K.191, P.192, S.193, I.194, L.222, P.223, G.224, K.225, A.227, E.228, F.241, T.242, G.243, S.244, V.247, R.250, V.251, E.263, L.264, G.265, G.266, C.297, E.395, F.397, L.423, H.455, F.462 18 PLIP interactions: 18 interactions with chain B Hydrophobic interactions: B:T.242 Hydrogen bonds: B:T.165, B:F.167, B:I.194, B:G.224, B:E.228, B:S.244, B:E.263, B:G.265, B:G.266, B:E.395, B:H.455 Water bridges: B:S.244, B:S.244, B:T.245, B:E.395, B:E.395 Salt bridges: B:K.191 NAP.6: 32 residues within 4Å: Chain C: I.164, T.165, P.166, F.167, N.168, K.191, P.192, S.193, I.194, L.222, P.223, G.224, K.225, A.227, E.228, F.241, T.242, G.243, S.244, V.247, R.250, V.251, E.263, L.264, G.265, G.266, C.297, E.395, F.397, L.423, H.455, F.462 18 PLIP interactions: 18 interactions with chain C Hydrophobic interactions: C:T.242 Hydrogen bonds: C:T.165, C:F.167, C:I.194, C:G.224, C:E.228, C:E.228, C:S.244, C:E.263, C:E.263, C:G.265, C:G.266, C:E.395 Water bridges: C:S.244, C:S.244, C:T.245, C:E.395 Salt bridges: C:K.191 NAP.8: 32 residues within 4Å: Chain D: I.164, T.165, P.166, F.167, N.168, K.191, P.192, S.193, I.194, L.222, P.223, G.224, K.225, A.227, E.228, F.241, T.242, G.243, S.244, V.247, R.250, V.251, E.263, L.264, G.265, G.266, C.297, E.395, F.397, L.423, H.455, F.462 18 PLIP interactions: 18 interactions with chain D Hydrophobic interactions: D:T.242 Hydrogen bonds: D:T.165, D:F.167, D:I.194, D:G.224, D:E.228, D:E.228, D:S.244, D:E.263, D:E.263, D:G.265, D:G.266, D:E.395 Water bridges: D:S.244, D:S.244, D:T.245, D:E.395 Salt bridges: D:K.191

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pohl, E. et al., The Crystal Structure of the Allosteric Non-phosphorylating glyceraldehyde-3-phosphate Dehydrogenase from the Hyperthermophilic Archaeum Thermoproteus tenax. J.Biol.Chem. (2002)

Release Date

2003-02-04

Peptides

glyceraldehyde-3-phosphate dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

glyceraldehyde-3-phosphate dehydrogenase