SMTL ID : 1kz8.1

CRYSTAL STRUCTURE OF PORCINE FRUCTOSE-1,6-BISPHOSPHATASE COMPLEXED WITH A NOVEL ALLOSTERIC-SITE INHIBITOR

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-tetramer

Ligands

4 x F6P: 6-O-phosphono-beta-D-fructofuranose(Non-covalent)

F6P.1: 14 residues within 4Å: Chain A: D.121, G.122, N.212, Y.215, Y.244, G.246, S.247, M.248, Y.264, K.269, K.274, L.275, E.280 Chain B: R.243 18 PLIP interactions: 3 interactions with chain B, 15 interactions with chain A Water bridges: B:R.243, B:R.243, A:G.122, A:S.123, A:S.124, A:K.269, A:K.269, A:K.274 Salt bridges: B:R.243, A:K.269, A:K.274 Hydrogen bonds: A:D.121, A:N.212, A:Y.215, A:Y.244, A:M.248, A:K.274, A:E.280 F6P.5: 13 residues within 4Å: Chain A: R.243 Chain B: D.121, G.122, N.212, Y.215, Y.244, G.246, S.247, M.248, Y.264, K.274, L.275, E.280 20 PLIP interactions: 17 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:D.121, B:D.121, B:G.122, B:N.212, B:Y.244, B:Y.244, B:M.248, B:Y.264, B:K.274, B:E.280 Water bridges: B:D.118, B:D.121, B:S.123, B:Y.215, B:Y.264, B:K.274, A:R.243, A:R.243 Salt bridges: B:K.274, A:R.243 F6P.9: 14 residues within 4Å: Chain C: D.121, G.122, N.212, Y.215, Y.244, G.246, S.247, M.248, Y.264, K.269, K.274, L.275, E.280 Chain D: R.243 18 PLIP interactions: 15 interactions with chain C, 3 interactions with chain D Hydrogen bonds: C:D.121, C:N.212, C:Y.215, C:Y.244, C:M.248, C:K.274, C:E.280 Water bridges: C:G.122, C:S.123, C:S.124, C:K.269, C:K.269, C:K.274, D:R.243, D:R.243 Salt bridges: C:K.269, C:K.274, D:R.243 F6P.13: 13 residues within 4Å: Chain C: R.243 Chain D: D.121, G.122, N.212, Y.215, Y.244, G.246, S.247, M.248, Y.264, K.274, L.275, E.280 20 PLIP interactions: 17 interactions with chain D, 3 interactions with chain C Hydrogen bonds: D:D.121, D:D.121, D:G.122, D:N.212, D:Y.244, D:Y.244, D:M.248, D:Y.264, D:K.274, D:E.280 Water bridges: D:D.118, D:D.121, D:S.123, D:Y.215, D:Y.264, D:K.274, C:R.243, C:R.243 Salt bridges: D:K.274, C:R.243

4 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 4 residues within 4Å: Chain A: E.97, D.118, L.120, D.121 No protein-ligand interaction detected (PLIP) MN.6: 4 residues within 4Å: Chain B: D.118, D.121, I.135, E.280 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.118, B:D.121, B:E.280 MN.10: 4 residues within 4Å: Chain C: E.97, D.118, L.120, D.121 No protein-ligand interaction detected (PLIP) MN.14: 4 residues within 4Å: Chain D: D.118, D.121, I.135, E.280 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:D.118, D:D.121, D:E.280

4 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.3: 15 residues within 4Å: Chain A: V.17, Q.20, G.21, A.24, G.26, T.27, G.28, E.29, M.30, T.31, K.112, Y.113, R.140, V.160, M.177 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:T.27, A:T.27, A:T.27, A:G.28, A:E.29, A:M.30, A:T.31, A:T.31, A:T.31, A:Y.113, A:Y.113, A:R.140 Water bridges: A:K.112, A:K.112 Salt bridges: A:K.112 AMP.7: 15 residues within 4Å: Chain B: V.17, Q.20, G.21, A.24, G.26, T.27, G.28, E.29, M.30, T.31, K.112, Y.113, R.140, V.160, M.177 14 PLIP interactions: 14 interactions with chain B Hydrogen bonds: B:T.27, B:T.27, B:T.27, B:G.28, B:E.29, B:M.30, B:T.31, B:Y.113, B:Y.113, B:R.140, B:R.140 Water bridges: B:T.31, B:T.31 Salt bridges: B:K.112 AMP.11: 15 residues within 4Å: Chain C: V.17, Q.20, G.21, A.24, G.26, T.27, G.28, E.29, M.30, T.31, K.112, Y.113, R.140, V.160, M.177 15 PLIP interactions: 15 interactions with chain C Hydrogen bonds: C:T.27, C:T.27, C:T.27, C:G.28, C:E.29, C:M.30, C:T.31, C:T.31, C:T.31, C:Y.113, C:Y.113, C:R.140 Water bridges: C:K.112, C:K.112 Salt bridges: C:K.112 AMP.15: 15 residues within 4Å: Chain D: V.17, Q.20, G.21, A.24, G.26, T.27, G.28, E.29, M.30, T.31, K.112, Y.113, R.140, V.160, M.177 14 PLIP interactions: 14 interactions with chain D Hydrogen bonds: D:T.27, D:T.27, D:T.27, D:G.28, D:E.29, D:M.30, D:T.31, D:Y.113, D:Y.113, D:R.140, D:R.140 Water bridges: D:T.31, D:T.31 Salt bridges: D:K.112

4 x PFE: {4-[3-(6,7-DIETHOXY-QUINAZOLIN-4-YLAMINO)-PHENYL]-THIAZOL-2-YL}-METHANOL(Non-covalent)

PFE.4: 16 residues within 4Å: Chain A: A.47, K.50, A.51, G.52, I.53, H.55, L.56, V.70, K.71, K.72, L.73, L.76 Chain D: A.47, A.51, L.76 Ligands: PFE.16 8 PLIP interactions: 7 interactions with chain A, 1 interactions with chain D Hydrophobic interactions: A:K.50, A:H.55, A:L.56, A:V.70, A:L.73 Water bridges: A:K.50 pi-Stacking: A:H.55 Hydrogen bonds: D:A.51 PFE.8: 15 residues within 4Å: Chain B: K.50, A.51, G.52, I.53, H.55, L.56, V.70, K.71, K.72, L.73, L.76 Chain C: A.47, A.51, L.76 Ligands: PFE.12 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain C Hydrophobic interactions: B:I.53, B:H.55, B:L.56, B:V.70 pi-Stacking: B:H.55 Hydrogen bonds: C:A.51 PFE.12: 16 residues within 4Å: Chain B: A.47, A.51, L.76 Chain C: A.47, K.50, A.51, G.52, I.53, H.55, L.56, V.70, K.71, K.72, L.73, L.76 Ligands: PFE.8 8 PLIP interactions: 7 interactions with chain C, 1 interactions with chain B Hydrophobic interactions: C:K.50, C:H.55, C:L.56, C:V.70, C:L.73 Water bridges: C:K.50 pi-Stacking: C:H.55 Hydrogen bonds: B:A.51 PFE.16: 15 residues within 4Å: Chain A: A.47, A.51, L.76 Chain D: K.50, A.51, G.52, I.53, H.55, L.56, V.70, K.71, K.72, L.73, L.76 Ligands: PFE.4 6 PLIP interactions: 5 interactions with chain D, 1 interactions with chain A Hydrophobic interactions: D:I.53, D:H.55, D:L.56, D:V.70 pi-Stacking: D:H.55 Hydrogen bonds: A:A.51

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wright, S.W. et al., ANILINOQUINAZOLINE INHIBITORS OF FRUCTOSE 1,6-BISPHOSPHATASE BIND AT A NOVEL ALLOSTERIC SITE: SYNTHESIS, IN VITRO CHARACTERIZATION, AND X-RAY CRYSTALLOGRAPHY. J.MED.CHEM. (2002)

Release Date

2002-10-16

Peptides

FRUCTOSE-1,6-BISPHOSPHATASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
F

C
A

D
F

FRUCTOSE-1,6-BISPHOSPHATASE