SMTL ID : 1kz9.2 (1 other biounit)

Mutant Enzyme L119F Lumazine Synthase from S.pombe

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

homo-10-mer

Ligands

10 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 5 residues within 4Å: Chain A: R.133 Chain B: G.90, S.91, T.92, H.94 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:S.91, B:T.92, B:T.92 Water bridges: B:H.94 Salt bridges: A:R.133 PO4.2: 5 residues within 4Å: Chain D: R.133 Chain E: G.90, S.91, T.92, H.94 5 PLIP interactions: 3 interactions with chain E, 2 interactions with chain D Hydrogen bonds: E:G.90, E:S.91, E:T.92 Water bridges: D:R.133 Salt bridges: D:R.133 PO4.3: 5 residues within 4Å: Chain B: R.133 Chain C: G.90, S.91, T.92, H.94 7 PLIP interactions: 6 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:S.91, C:T.92, C:T.92, C:T.92 Water bridges: C:G.90, C:T.92 Salt bridges: B:R.133 PO4.4: 5 residues within 4Å: Chain A: G.90, S.91, T.92, H.94 Chain E: R.133 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain E Hydrogen bonds: A:S.91, A:T.92, A:T.92 Water bridges: A:F.95 Salt bridges: E:R.133 PO4.5: 5 residues within 4Å: Chain C: R.133 Chain D: G.90, S.91, T.92, H.94 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:S.91, D:T.92 Salt bridges: C:R.133 PO4.6: 5 residues within 4Å: Chain F: R.133 Chain G: G.90, S.91, T.92, H.94 5 PLIP interactions: 4 interactions with chain G, 1 interactions with chain F Hydrogen bonds: G:S.91, G:T.92, G:T.92 Water bridges: G:T.92 Salt bridges: F:R.133 PO4.7: 5 residues within 4Å: Chain I: R.133 Chain J: G.90, S.91, T.92, H.94 5 PLIP interactions: 3 interactions with chain J, 2 interactions with chain I Hydrogen bonds: J:G.90, J:S.91, J:T.92 Water bridges: I:R.133 Salt bridges: I:R.133 PO4.8: 5 residues within 4Å: Chain G: R.133 Chain H: G.90, S.91, T.92, H.94 6 PLIP interactions: 1 interactions with chain G, 5 interactions with chain H Salt bridges: G:R.133 Hydrogen bonds: H:S.91, H:T.92, H:T.92, H:T.92 Water bridges: H:G.90 PO4.9: 5 residues within 4Å: Chain F: G.90, S.91, T.92, H.94 Chain J: R.133 6 PLIP interactions: 5 interactions with chain F, 1 interactions with chain J Hydrogen bonds: F:S.91, F:T.92, F:T.92 Water bridges: F:T.92, F:F.95 Salt bridges: J:R.133 PO4.10: 5 residues within 4Å: Chain H: R.133 Chain I: G.90, S.91, T.92, H.94 3 PLIP interactions: 2 interactions with chain I, 1 interactions with chain H Hydrogen bonds: I:S.91, I:T.92 Salt bridges: H:R.133

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gerhardt, S. et al., The structural basis of riboflavin binding to Schizosaccharomyces pombe 6,7-dimethyl-8-ribityllumazine synthase. J.Mol.Biol. (2002)

Release Date

2002-07-24

Peptides

6,7-Dimethyl-8-ribityllumazine Synthase: ABCDEFGHIJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
A

G
B

H
C

I
D

J
E

6,7-Dimethyl-8-ribityllumazine Synthase

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