SMTL ID : 1l2g.4 (3 other biounits)

Structure of a C-terminally truncated form of glycoprotein D from HSV-1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.85 Å

Oligo State

homo-octamer

Ligands

8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: I.42, Q.43, N.96, N.173 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:N.173 Hydrogen bonds: A:I.42, A:Q.43 NAG.2: 4 residues within 4Å: Chain B: I.42, Q.43, N.96, N.173 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:N.173 Hydrogen bonds: B:I.42, B:Q.43 NAG.3: 4 residues within 4Å: Chain C: I.42, Q.43, N.96, N.173 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:N.173 Hydrogen bonds: C:I.42, C:Q.43 NAG.4: 4 residues within 4Å: Chain D: I.42, Q.43, N.96, N.173 3 PLIP interactions: 3 interactions with chain D Hydrophobic interactions: D:N.173 Hydrogen bonds: D:I.42, D:Q.43 NAG.5: 4 residues within 4Å: Chain E: I.42, Q.43, N.96, N.173 3 PLIP interactions: 3 interactions with chain E Hydrophobic interactions: E:N.173 Hydrogen bonds: E:I.42, E:Q.43 NAG.6: 4 residues within 4Å: Chain F: I.42, Q.43, N.96, N.173 3 PLIP interactions: 3 interactions with chain F Hydrophobic interactions: F:N.173 Hydrogen bonds: F:I.42, F:Q.43 NAG.7: 4 residues within 4Å: Chain G: I.42, Q.43, N.96, N.173 3 PLIP interactions: 3 interactions with chain G Hydrophobic interactions: G:N.173 Hydrogen bonds: G:I.42, G:Q.43 NAG.8: 4 residues within 4Å: Chain H: I.42, Q.43, N.96, N.173 3 PLIP interactions: 3 interactions with chain H Hydrophobic interactions: H:N.173 Hydrogen bonds: H:I.42, H:Q.43

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Carfi, A. et al., Herpes simplex virus glycoprotein D bound to the human receptor HveA. Mol.Cell (2001)

Release Date

2003-12-16

Peptides

Glycoprotein D: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
C

C
D

D
C

E
D

F
C

G
D

H
C

Glycoprotein D

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