- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-hexamer
- Ligands
- 12 x MN: MANGANESE (II) ION(Non-covalent)
- 6 x MG: MAGNESIUM ION(Non-covalent)
MG.3: 4 residues within 4Å:- Chain A: H.174
- Chain B: H.42, G.298
- Ligands: FMT.5
3 PLIP interactions:1 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:H.174, H2O.383, H2O.384
MG.8: 4 residues within 4Å:- Chain B: H.174
- Chain C: H.42, G.298
- Ligands: FMT.10
3 PLIP interactions:1 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:H.174, H2O.767, H2O.768
MG.13: 4 residues within 4Å:- Chain A: H.42, G.298
- Chain C: H.174
- Ligands: FMT.15
3 PLIP interactions:1 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:H.174, H2O.1151, H2O.1152
MG.18: 4 residues within 4Å:- Chain D: H.174
- Chain E: H.42, G.298
- Ligands: FMT.20
3 PLIP interactions:1 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:H.174, H2O.1535, H2O.1536
MG.23: 4 residues within 4Å:- Chain E: H.174
- Chain F: H.42, G.298
- Ligands: FMT.25
3 PLIP interactions:1 interactions with chain E, 2 Ligand-Water interactions- Metal complexes: E:H.174, H2O.1919, H2O.1920
MG.28: 4 residues within 4Å:- Chain D: H.42, G.298
- Chain F: H.174
- Ligands: FMT.30
3 PLIP interactions:1 interactions with chain F, 2 Ligand-Water interactions- Metal complexes: F:H.174, H2O.2303, H2O.2304
- 12 x FMT: FORMIC ACID(Non-functional Binders)
FMT.4: 8 residues within 4Å:- Chain A: M.84, R.92, H.95, H.97, E.101, L.153, F.155
- Ligands: MN.1
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.92, A:R.92
FMT.5: 5 residues within 4Å:- Chain A: A.173, H.174
- Chain B: E.39, T.40
- Ligands: MG.3
1 PLIP interactions:1 interactions with chain A- Water bridges: A:A.173
FMT.9: 8 residues within 4Å:- Chain B: M.84, R.92, H.95, H.97, E.101, L.153, F.155
- Ligands: MN.6
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:R.92, B:R.92
FMT.10: 5 residues within 4Å:- Chain B: A.173, H.174
- Chain C: E.39, T.40
- Ligands: MG.8
1 PLIP interactions:1 interactions with chain B- Water bridges: B:A.173
FMT.14: 8 residues within 4Å:- Chain C: M.84, R.92, H.95, H.97, E.101, L.153, F.155
- Ligands: MN.11
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:R.92, C:R.92
FMT.15: 5 residues within 4Å:- Chain A: E.39, T.40
- Chain C: A.173, H.174
- Ligands: MG.13
1 PLIP interactions:1 interactions with chain C- Water bridges: C:A.173
FMT.19: 8 residues within 4Å:- Chain D: M.84, R.92, H.95, H.97, E.101, L.153, F.155
- Ligands: MN.16
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:R.92, D:R.92
- Water bridges: D:Y.200
FMT.20: 5 residues within 4Å:- Chain D: A.173, H.174
- Chain E: E.39, T.40
- Ligands: MG.18
1 PLIP interactions:1 interactions with chain D- Water bridges: D:A.173
FMT.24: 8 residues within 4Å:- Chain E: M.84, R.92, H.95, H.97, E.101, L.153, F.155
- Ligands: MN.21
3 PLIP interactions:3 interactions with chain E- Hydrogen bonds: E:R.92, E:R.92
- Water bridges: E:Y.200
FMT.25: 5 residues within 4Å:- Chain E: A.173, H.174
- Chain F: E.39, T.40
- Ligands: MG.23
1 PLIP interactions:1 interactions with chain E- Water bridges: E:A.173
FMT.29: 8 residues within 4Å:- Chain F: M.84, R.92, H.95, H.97, E.101, L.153, F.155
- Ligands: MN.26
3 PLIP interactions:3 interactions with chain F- Hydrogen bonds: F:R.92, F:R.92
- Water bridges: F:Y.200
FMT.30: 5 residues within 4Å:- Chain D: E.39, T.40
- Chain F: A.173, H.174
- Ligands: MG.28
1 PLIP interactions:1 interactions with chain F- Water bridges: F:A.173
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Anand, R. et al., Structure of oxalate decarboxylase from Bacillus subtilis at 1.75 A resolution. Biochemistry (2002)
- Release Date
- 2002-07-03
- Peptides
- YVRK PROTEIN: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-hexamer
- Ligands
- 12 x MN: MANGANESE (II) ION(Non-covalent)
- 6 x MG: MAGNESIUM ION(Non-covalent)
- 12 x FMT: FORMIC ACID(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Anand, R. et al., Structure of oxalate decarboxylase from Bacillus subtilis at 1.75 A resolution. Biochemistry (2002)
- Release Date
- 2002-07-03
- Peptides
- YVRK PROTEIN: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
A