SMTL ID : 1l4u.1

CRYSTAL STRUCTURE OF SHIKIMATE KINASE FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH MGADP AND PT(II) AT 1.8 ANGSTROM RESOLUTION

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x PT: PLATINUM (II) ION(Non-covalent)

PT.1: 4 residues within 4Å: Chain A: M.133 Ligands: CL.7, CL.8, EPE.10 No protein-ligand interaction detected (PLIP)

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: S.16, D.32 Ligands: ADP.9 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:S.16, H2O.4, H2O.6, H2O.7, H2O.8

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 1 residues within 4Å: Chain A: R.66 Ligand excluded by PLIP CL.4: 4 residues within 4Å: Chain A: V.28, G.29, H.72, G.74 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain A: P.11, K.15, G.80 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain A: R.66, A.90, A.91 Ligand excluded by PLIP CL.7: 3 residues within 4Å: Chain A: M.133 Ligands: PT.1, EPE.10 Ligand excluded by PLIP CL.8: 5 residues within 4Å: Chain A: A.104, R.130, M.133 Ligands: PT.1, EPE.10 Ligand excluded by PLIP

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.9: 14 residues within 4Å: Chain A: L.10, P.11, G.12, S.13, G.14, K.15, S.16, T.17, R.110, R.117, R.153, N.154, P.155 Ligands: MG.2 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:G.12, A:S.13, A:G.14, A:K.15, A:S.16, A:T.17, A:T.17, A:T.17, A:R.110, A:R.153 Water bridges: A:S.16, A:S.16, A:R.117, A:T.150, A:T.150 Salt bridges: A:K.15, A:R.117, A:R.117 pi-Cation interactions: A:R.110, A:R.110

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.10: 6 residues within 4Å: Chain A: R.130, M.133, A.134 Ligands: PT.1, CL.7, CL.8 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:M.133 Salt bridges: A:R.130

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gu, Y. et al., Crystal structure of shikimate kinase from Mycobacterium tuberculosis reveals the dynamic role of the LID domain in catalysis. J.Mol.Biol. (2002)

Release Date

2002-06-12

Peptides

SHIKIMATE KINASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

SHIKIMATE KINASE

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