SMTL ID : 1l4y.1

CRYSTAL STRUCTURE OF SHIKIMATE KINASE FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH MGADP AT 2.0 ANGSTROM RESOLUTION

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: S.16 Ligands: ADP.7 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:S.16, H2O.4, H2O.4, H2O.5, H2O.6

5 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 1 residues within 4Å: Chain A: R.66 Ligand excluded by PLIP CL.3: 4 residues within 4Å: Chain A: V.28, G.29, H.72, G.74 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain A: P.11, K.15, G.80 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain A: R.66, A.90, A.91 Ligand excluded by PLIP CL.6: 2 residues within 4Å: Chain A: R.152, N.154 Ligand excluded by PLIP

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.7: 15 residues within 4Å: Chain A: L.10, P.11, G.12, S.13, G.14, K.15, S.16, T.17, R.110, R.117, R.153, N.154, P.155, V.158 Ligands: MG.1 22 PLIP interactions: 22 interactions with chain A Hydrogen bonds: A:G.12, A:S.13, A:G.14, A:K.15, A:S.16, A:T.17, A:T.17, A:T.17, A:R.153 Water bridges: A:S.16, A:S.16, A:S.16, A:R.110, A:R.110, A:R.117, A:T.150, A:T.150 Salt bridges: A:K.15, A:R.117, A:R.117 pi-Cation interactions: A:R.110, A:R.110

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gu, Y. et al., Crystal structure of shikimate kinase from Mycobacterium tuberculosis reveals the dynamic role of the LID domain in catalysis. J.Mol.Biol. (2002)

Release Date

2002-06-12

Peptides

SHIKIMATE KINASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

SHIKIMATE KINASE

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