SMTL ID : 1l5x.2 (1 other biounit)

The 2.0-Angstrom resolution crystal structure of a survival protein E (SurE) homolog from Pyrobaculum aerophilum

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-tetramer

Ligands

14 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: Y.20, V.29, D.30, V.31, R.62, A.63, I.64 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.20, A:V.31, A:V.31 Water bridges: A:D.30, A:R.62 GOL.2: 7 residues within 4Å: Chain A: K.2, D.30, V.32, I.64, G.80, L.81, Y.85 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.2, A:A.77 GOL.3: 5 residues within 4Å: Chain A: G.212, R.213, D.214 Chain D: P.202, R.203 3 PLIP interactions: 1 interactions with chain D, 2 interactions with chain A Hydrogen bonds: D:R.203, A:D.214, A:D.214 GOL.4: 4 residues within 4Å: Chain A: A.116, D.166 Chain B: L.100, K.189 2 PLIP interactions: 2 interactions with chain A Water bridges: A:T.238, A:N.242 GOL.5: 5 residues within 4Å: Chain A: L.190, A.193, Q.194, Q.195, R.213 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:Q.194, A:Q.195, A:R.213 Water bridges: B:K.84 GOL.6: 7 residues within 4Å: Chain A: W.209, L.210, G.212 Chain B: L.47 Chain D: D.201, P.202, R.203 4 PLIP interactions: 1 interactions with chain D, 1 interactions with chain B, 2 interactions with chain A Hydrogen bonds: D:R.203, B:L.47, A:L.210 Water bridges: A:L.210 GOL.7: 9 residues within 4Å: Chain A: L.129, E.134, L.135, N.138, A.141, P.173, R.174, R.175, L.176 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.134, A:N.138, A:L.176 Water bridges: A:L.176 GOL.10: 7 residues within 4Å: Chain C: Y.20, V.29, D.30, V.31, R.62, A.63, I.64 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:V.31, C:V.31 Water bridges: C:R.62 GOL.11: 7 residues within 4Å: Chain C: K.2, D.30, V.32, I.64, G.80, L.81, Y.85 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:K.2, C:A.77 GOL.12: 5 residues within 4Å: Chain B: P.202, R.203 Chain C: G.212, R.213, D.214 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:D.214, C:D.214, B:R.203 GOL.13: 4 residues within 4Å: Chain C: A.116, D.166 Chain D: L.100, K.189 1 PLIP interactions: 1 interactions with chain C Water bridges: C:N.242 GOL.14: 5 residues within 4Å: Chain C: L.190, A.193, Q.194, Q.195, R.213 4 PLIP interactions: 1 interactions with chain D, 3 interactions with chain C Water bridges: D:K.84 Hydrogen bonds: C:Q.194, C:Q.195, C:R.213 GOL.15: 7 residues within 4Å: Chain B: D.201, P.202, R.203 Chain C: W.209, L.210, G.212 Chain D: L.47 4 PLIP interactions: 2 interactions with chain C, 1 interactions with chain D, 1 interactions with chain B Hydrogen bonds: C:L.210, D:L.47, B:R.203 Water bridges: C:L.210 GOL.16: 9 residues within 4Å: Chain C: L.129, E.134, L.135, N.138, A.141, P.173, R.174, R.175, L.176 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:E.134, C:N.138, C:L.176 Water bridges: C:L.176

4 x ACY: ACETIC ACID(Non-functional Binders)

ACY.8: 8 residues within 4Å: Chain A: G.164, T.238, R.248, E.249, V.250 Chain B: A.243, D.245, R.248 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:T.238, A:R.248, A:V.250 Water bridges: A:T.238, A:T.238 Salt bridges: A:R.248 ACY.9: 5 residues within 4Å: Chain A: G.95, D.96, Y.128, L.129, R.174 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.96, A:D.96, A:L.129, A:R.174 ACY.17: 8 residues within 4Å: Chain C: G.164, T.238, R.248, E.249, V.250 Chain D: A.243, D.245, R.248 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:T.238, C:R.248, C:V.250 Hydrogen bonds: C:T.238 Salt bridges: C:R.248 ACY.18: 5 residues within 4Å: Chain C: G.95, D.96, Y.128, L.129, R.174 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:D.96, C:L.129, C:R.174

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mura, C. et al., Structure and Function of an Archaeal Homolog of Survival Protein E (SurE-alpha): An Acid Phosphatase with Purine Nucleotide Specificity. J.Mol.Biol. (2003)

Release Date

2003-02-25

Peptides

Survival protein E: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Survival protein E

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