SMTL ID : 1l6o.1

XENOPUS DISHEVELLED PDZ DOMAIN

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-trimer

Ligands

3 x SER- LEU- LYS- LEU- MET- THR- THR- VAL: Dapper 1(Non-covalent)

SER-LEU-LYS-LEU-MET-THR-THR-VAL.1: 17 residues within 4Å: Chain A: F.14, L.15, G.16, I.17, S.18, I.19, V.20, G.21, Q.22, S.23, D.68, V.71, R.75 Chain B: Y.32, L.91, E.92, H.93 19 PLIP interactions: 16 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:I.17, A:I.19, A:V.20, A:Q.22, A:V.71, B:Y.32, B:L.91 Hydrogen bonds: A:L.15, A:G.16, A:I.17, A:I.17, A:I.19, A:I.19, A:I.19, A:G.21, A:G.21, A:S.23, A:S.23, B:E.92 SER-LEU-LYS-LEU-MET-THR-THR-VAL.2: 23 residues within 4Å: Chain A: Q.22, Y.32, L.91, E.92, H.93, H.95 Chain B: F.14, L.15, G.16, I.17, S.18, I.19, V.20, G.21, Q.22, S.23, V.71, R.75, V.78 Chain C: K.11, Y.12, K.38, G.39 24 PLIP interactions: 15 interactions with chain B, 7 interactions with chain A, 2 interactions with chain C Hydrophobic interactions: B:I.17, B:V.20, B:Q.22, B:V.71, A:Y.32, A:L.91, A:E.92, C:K.38 Hydrogen bonds: B:L.15, B:G.16, B:I.17, B:I.17, B:I.17, B:I.19, B:I.19, B:I.19, B:G.21, B:G.21, B:S.23, A:Q.22, A:Y.32, A:Y.32, A:E.92, C:K.11 SER-LEU-LYS-LEU-MET-THR-THR-VAL.3: 15 residues within 4Å: Chain A: D.45, G.46, R.47 Chain C: F.14, L.15, G.16, I.17, S.18, I.19, V.20, G.21, S.23, V.71, R.75, V.78 15 PLIP interactions: 14 interactions with chain C, 1 interactions with chain A Hydrophobic interactions: C:L.15, C:I.17, C:V.71, A:R.47 Hydrogen bonds: C:L.15, C:G.16, C:I.17, C:I.17, C:I.19, C:I.19, C:I.19, C:G.21, C:G.21, C:S.23, C:S.23

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cheyette, B.N.R. et al., Dapper, a Dishevelled-associated antagonist of beta-catenin and JNK signaling, is required for notochord formation. Dev.Cell (2002)

Release Date

2003-06-03

Peptides

Segment polarity protein dishevelled homolog DVL-2: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Segment polarity protein dishevelled homolog DVL-2