- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x ZN: ZINC ION(Non-covalent)
- 8 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 2 residues within 4Å:- Chain A: E.231, D.235
6 PLIP interactions:1 interactions with chain A, 5 Ligand-Water interactions- Metal complexes: A:E.231, H2O.2, H2O.12, H2O.16, H2O.19, H2O.42
MG.4: 2 residues within 4Å:- Chain B: E.231, D.235
6 PLIP interactions:1 interactions with chain B, 5 Ligand-Water interactions- Metal complexes: B:E.231, H2O.264, H2O.268, H2O.271, H2O.273, H2O.284
MG.8: 2 residues within 4Å:- Chain C: E.231, D.235
6 PLIP interactions:1 interactions with chain C, 5 Ligand-Water interactions- Metal complexes: C:E.231, H2O.499, H2O.509, H2O.513, H2O.516, H2O.539
MG.10: 2 residues within 4Å:- Chain D: E.231, D.235
6 PLIP interactions:1 interactions with chain D, 5 Ligand-Water interactions- Metal complexes: D:E.231, H2O.761, H2O.765, H2O.768, H2O.770, H2O.781
MG.14: 2 residues within 4Å:- Chain E: E.231, D.235
6 PLIP interactions:1 interactions with chain E, 5 Ligand-Water interactions- Metal complexes: E:E.231, H2O.996, H2O.1006, H2O.1010, H2O.1013, H2O.1036
MG.16: 2 residues within 4Å:- Chain F: E.231, D.235
6 PLIP interactions:1 interactions with chain F, 5 Ligand-Water interactions- Metal complexes: F:E.231, H2O.1258, H2O.1262, H2O.1265, H2O.1267, H2O.1278
MG.20: 2 residues within 4Å:- Chain G: E.231, D.235
6 PLIP interactions:1 interactions with chain G, 5 Ligand-Water interactions- Metal complexes: G:E.231, H2O.1493, H2O.1503, H2O.1507, H2O.1510, H2O.1533
MG.22: 2 residues within 4Å:- Chain H: E.231, D.235
6 PLIP interactions:1 interactions with chain H, 5 Ligand-Water interactions- Metal complexes: H:E.231, H2O.1755, H2O.1759, H2O.1762, H2O.1764, H2O.1775
- 8 x DSB: 4,7-DIOXOSEBACIC ACID(Covalent)
DSB.5: 14 residues within 4Å:- Chain A: S.164, Y.191, K.194, F.199, Y.200, F.203, R.204, R.215, Q.219, K.246, Y.269, V.271, S.272, Y.311
20 PLIP interactions:20 interactions with chain A- Hydrophobic interactions: A:K.194, A:Y.200, A:Y.200, A:F.203, A:F.203, A:F.203, A:K.246, A:Y.269, A:Y.269
- Hydrogen bonds: A:Q.219, A:Y.269, A:Y.269, A:S.272, A:Y.311
- Water bridges: A:R.215
- Salt bridges: A:K.194, A:R.204, A:R.215, A:K.246, A:K.246
DSB.6: 15 residues within 4Å:- Chain B: F.78, S.164, Y.191, K.194, F.199, Y.200, F.203, R.204, R.215, Q.219, K.246, Y.269, V.271, S.272, Y.311
16 PLIP interactions:16 interactions with chain B- Hydrophobic interactions: B:F.78, B:Y.191, B:K.194, B:Y.200, B:F.203, B:F.203, B:K.246, B:Y.269
- Hydrogen bonds: B:S.272, B:Y.311
- Water bridges: B:R.215
- Salt bridges: B:K.194, B:R.204, B:R.215, B:K.246, B:K.246
DSB.11: 14 residues within 4Å:- Chain C: S.164, Y.191, K.194, F.199, Y.200, F.203, R.204, R.215, Q.219, K.246, Y.269, V.271, S.272, Y.311
20 PLIP interactions:20 interactions with chain C- Hydrophobic interactions: C:K.194, C:Y.200, C:Y.200, C:F.203, C:F.203, C:F.203, C:K.246, C:Y.269, C:Y.269
- Hydrogen bonds: C:Q.219, C:Y.269, C:Y.269, C:S.272, C:Y.311
- Water bridges: C:R.215
- Salt bridges: C:K.194, C:R.204, C:R.215, C:K.246, C:K.246
DSB.12: 15 residues within 4Å:- Chain D: F.78, S.164, Y.191, K.194, F.199, Y.200, F.203, R.204, R.215, Q.219, K.246, Y.269, V.271, S.272, Y.311
16 PLIP interactions:16 interactions with chain D- Hydrophobic interactions: D:F.78, D:Y.191, D:K.194, D:Y.200, D:F.203, D:F.203, D:K.246, D:Y.269
- Hydrogen bonds: D:S.272, D:Y.311
- Water bridges: D:R.215
- Salt bridges: D:K.194, D:R.204, D:R.215, D:K.246, D:K.246
DSB.17: 14 residues within 4Å:- Chain E: S.164, Y.191, K.194, F.199, Y.200, F.203, R.204, R.215, Q.219, K.246, Y.269, V.271, S.272, Y.311
20 PLIP interactions:20 interactions with chain E- Hydrophobic interactions: E:K.194, E:Y.200, E:Y.200, E:F.203, E:F.203, E:F.203, E:K.246, E:Y.269, E:Y.269
- Hydrogen bonds: E:Q.219, E:Y.269, E:Y.269, E:S.272, E:Y.311
- Water bridges: E:R.215
- Salt bridges: E:K.194, E:R.204, E:R.215, E:K.246, E:K.246
DSB.18: 15 residues within 4Å:- Chain F: F.78, S.164, Y.191, K.194, F.199, Y.200, F.203, R.204, R.215, Q.219, K.246, Y.269, V.271, S.272, Y.311
16 PLIP interactions:16 interactions with chain F- Hydrophobic interactions: F:F.78, F:Y.191, F:K.194, F:Y.200, F:F.203, F:F.203, F:K.246, F:Y.269
- Hydrogen bonds: F:S.272, F:Y.311
- Water bridges: F:R.215
- Salt bridges: F:K.194, F:R.204, F:R.215, F:K.246, F:K.246
DSB.23: 14 residues within 4Å:- Chain G: S.164, Y.191, K.194, F.199, Y.200, F.203, R.204, R.215, Q.219, K.246, Y.269, V.271, S.272, Y.311
20 PLIP interactions:20 interactions with chain G- Hydrophobic interactions: G:K.194, G:Y.200, G:Y.200, G:F.203, G:F.203, G:F.203, G:K.246, G:Y.269, G:Y.269
- Hydrogen bonds: G:Q.219, G:Y.269, G:Y.269, G:S.272, G:Y.311
- Water bridges: G:R.215
- Salt bridges: G:K.194, G:R.204, G:R.215, G:K.246, G:K.246
DSB.24: 15 residues within 4Å:- Chain H: F.78, S.164, Y.191, K.194, F.199, Y.200, F.203, R.204, R.215, Q.219, K.246, Y.269, V.271, S.272, Y.311
16 PLIP interactions:16 interactions with chain H- Hydrophobic interactions: H:F.78, H:Y.191, H:K.194, H:Y.200, H:F.203, H:F.203, H:K.246, H:Y.269
- Hydrogen bonds: H:S.272, H:Y.311
- Water bridges: H:R.215
- Salt bridges: H:K.194, H:R.204, H:R.215, H:K.246, H:K.246
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Jaffe, E.K. et al., Species-Specific Inhibition of Porphobilinogen Synthase by 4-Oxosebacic Acid. J.Biol.Chem. (2002)
- Release Date
- 2002-04-17
- Peptides
- PORPHOBILINOGEN SYNTHASE: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
BG
AH
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x ZN: ZINC ION(Non-covalent)
- 8 x MG: MAGNESIUM ION(Non-covalent)
- 8 x DSB: 4,7-DIOXOSEBACIC ACID(Covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Jaffe, E.K. et al., Species-Specific Inhibition of Porphobilinogen Synthase by 4-Oxosebacic Acid. J.Biol.Chem. (2002)
- Release Date
- 2002-04-17
- Peptides
- PORPHOBILINOGEN SYNTHASE: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
BE
AF
BG
AH
B