SMTL ID : 1l9l.1

GRANULYSIN FROM HUMAN CYTOLYTIC T LYMPHOCYTES

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 0.92 Å

Oligo State

monomer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: R.38, S.39, R.42 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.39 Water bridges: A:R.38, A:S.39 Salt bridges: A:R.42 SO4.2: 3 residues within 4Å: Chain A: V.44, N.47, R.51 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.47 Water bridges: A:F.48, A:R.51, A:R.51 Salt bridges: A:R.51 SO4.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) SO4.4: 2 residues within 4Å: Chain A: R.42, R.46 5 PLIP interactions: 5 interactions with chain A Water bridges: A:R.35, A:R.42, A:R.46 Salt bridges: A:R.42, A:R.46

1 x MPO: 3[N-MORPHOLINO]PROPANE SULFONIC ACID(Non-covalent)

MPO.5: 3 residues within 4Å: Chain A: G.1, L.73, R.74 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.1, A:R.74

3 x EOH: ETHANOL(Non-functional Binders)

EOH.6: 4 residues within 4Å: Chain A: K.15, V.18, D.19, P.21 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:P.21 Hydrogen bonds: A:V.18 EOH.7: 8 residues within 4Å: Chain A: F.48, Y.52, R.55, V.56, I.69, C.70, D.72, L.73 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:R.55 Hydrogen bonds: A:D.72 Water bridges: A:D.72 EOH.8: 1 residues within 4Å: Chain A: K.16 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.16

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Anderson, D.H. et al., Granulysin Crystal Structure and a Structure-Derived Lytic Mechanism. J.Mol.Biol. (2002)

Release Date

2002-11-06

Peptides

Granulysin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Granulysin