SMTL ID : 1ldg.1

PLASMODIUM FALCIPARUM L-LACTATE DEHYDROGENASE COMPLEXED WITH NADH AND OXAMATE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.74 Å

Oligo State

homo-tetramer

Ligands

4 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)

NAI.1: 30 residues within 4Å: Chain A: V.10, G.11, G.13, M.14, I.15, F.34, D.35, I.36, V.37, M.40, Y.67, T.79, A.80, G.81, F.82, T.83, L.98, N.102, I.105, E.108, V.125, T.126, N.127, V.129, L.150, L.154, H.182, P.235, P.239 Ligands: OXM.2 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:I.15, A:V.125, A:L.154, A:P.239 Hydrogen bonds: A:G.13, A:M.14, A:I.15, A:I.36, A:Y.67, A:G.81, A:F.82, A:N.102, A:E.108, A:N.127, A:N.127, A:L.150 Water bridges: A:G.16, A:S.234 NAI.3: 30 residues within 4Å: Chain B: V.10, G.11, G.13, M.14, I.15, F.34, D.35, I.36, V.37, M.40, Y.67, T.79, A.80, G.81, F.82, T.83, L.98, N.102, I.105, E.108, V.125, T.126, N.127, V.129, L.150, L.154, H.182, P.235, P.239 Ligands: OXM.4 18 PLIP interactions: 18 interactions with chain B Hydrophobic interactions: B:I.15, B:V.125, B:L.154, B:P.239 Hydrogen bonds: B:G.13, B:M.14, B:I.15, B:I.36, B:Y.67, B:G.81, B:F.82, B:N.102, B:E.108, B:N.127, B:N.127, B:L.150 Water bridges: B:G.16, B:S.234 NAI.5: 30 residues within 4Å: Chain C: V.10, G.11, G.13, M.14, I.15, F.34, D.35, I.36, V.37, M.40, Y.67, T.79, A.80, G.81, F.82, T.83, L.98, N.102, I.105, E.108, V.125, T.126, N.127, V.129, L.150, L.154, H.182, P.235, P.239 Ligands: OXM.6 19 PLIP interactions: 19 interactions with chain C Hydrophobic interactions: C:I.15, C:V.125, C:L.154, C:P.239 Hydrogen bonds: C:G.13, C:M.14, C:I.15, C:I.36, C:Y.67, C:Y.67, C:G.81, C:F.82, C:N.102, C:N.127, C:N.127, C:L.150 Water bridges: C:G.16, C:T.83, C:S.234 NAI.7: 30 residues within 4Å: Chain D: V.10, G.11, G.13, M.14, I.15, F.34, D.35, I.36, V.37, M.40, Y.67, T.79, A.80, G.81, F.82, T.83, L.98, N.102, I.105, E.108, V.125, T.126, N.127, V.129, L.150, L.154, H.182, P.235, P.239 Ligands: OXM.8 19 PLIP interactions: 19 interactions with chain D Hydrophobic interactions: D:I.15, D:V.125, D:L.154, D:P.239 Hydrogen bonds: D:G.13, D:M.14, D:I.15, D:I.36, D:Y.67, D:Y.67, D:G.81, D:F.82, D:N.102, D:N.127, D:N.127, D:L.150 Water bridges: D:G.16, D:T.83, D:S.234

4 x OXM: OXAMIC ACID(Non-covalent)

OXM.2: 9 residues within 4Å: Chain A: R.95, N.127, L.154, R.158, H.182, A.225, S.234, P.235 Ligands: NAI.1 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:R.95, A:N.127, A:S.234 Water bridges: A:A.225, A:S.234 Salt bridges: A:R.95, A:R.158, A:H.182 OXM.4: 9 residues within 4Å: Chain B: R.95, N.127, L.154, R.158, H.182, A.225, S.234, P.235 Ligands: NAI.3 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:R.95, B:N.127, B:S.234 Water bridges: B:A.225, B:S.234 Salt bridges: B:R.95, B:R.158, B:H.182 OXM.6: 9 residues within 4Å: Chain C: R.95, N.127, L.154, R.158, H.182, A.225, S.234, P.235 Ligands: NAI.5 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:R.95, C:N.127, C:S.234 Water bridges: C:A.225, C:S.234 Salt bridges: C:R.95, C:R.158, C:H.182 OXM.8: 9 residues within 4Å: Chain D: R.95, N.127, L.154, R.158, H.182, A.225, S.234, P.235 Ligands: NAI.7 8 PLIP interactions: 8 interactions with chain D Hydrogen bonds: D:R.95, D:N.127, D:S.234 Water bridges: D:A.225, D:S.234 Salt bridges: D:R.95, D:R.158, D:H.182

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dunn, C.R. et al., The structure of lactate dehydrogenase from Plasmodium falciparum reveals a new target for anti-malarial design. Nat.Struct.Biol. (1996)

Release Date

1997-09-17

Peptides

L-LACTATE DEHYDROGENASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

L-LACTATE DEHYDROGENASE

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